SOLTUB.AGRIA.G00000025097

Description : Replication protein a 70 kDa dna-binding subunit b

Gene families : OG_02_0000028 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000025097
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_70

Type	GO Term	Name	Evidence	Source
BP	GO:0000280	nuclear division	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007127	meiosis I	IEA	AHRD
BP	GO:0007276	gamete generation	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043229	intracellular organelle	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048232	male gamete generation	IEA	AHRD
BP	GO:0048285	organelle fission	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0050896	response to stimulus	IEA	AHRD
BP	GO:0051276	chromosome organization	IEA	AHRD
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140013	meiotic nuclear division	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0000725	recombinational repair	IEP	Predict GO terms from Neighborhoods
MF	GO:0003684	damaged DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003697	single-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005662	DNA replication factor A complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006260	DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006268	DNA unwinding involved in DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006278	RNA-templated DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006289	nucleotide-excision repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006302	double-strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0007004	telomere maintenance via telomerase	IEP	Predict GO terms from Neighborhoods
BP	GO:0010833	telomere maintenance via telomere lengthening	IEP	Predict GO terms from Neighborhoods
BP	GO:0032200	telomere organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032392	DNA geometric change	IEP	Predict GO terms from Neighborhoods
BP	GO:0032508	DNA duplex unwinding	IEP	Predict GO terms from Neighborhoods
MF	GO:0042162	telomeric DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043047	single-stranded telomeric DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0071103	DNA conformation change	IEP	Predict GO terms from Neighborhoods
BP	GO:0071897	DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0098847	sequence-specific single stranded DNA binding	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR012340	NA-bd_OB-fold	126	247
IPR012340	NA-bd_OB-fold	286	415
IPR012340	NA-bd_OB-fold	5	111

External Links

No external refs found!

SOLTUB.AGRIA.G00000025097

Expression Profile

Co-expression Networks

Functional Annotation