SOLTUB.AGRIA.G00000025171

Description : Pentatricopeptide repeat-containing protein, putative

Gene families : OG_02_0006364 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000025171
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_111

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0012505	endomembrane system	IEA	AHRD
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	IEA	AHRD
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	204	232
IPR002885	Pentatricopeptide_repeat	376	423
IPR002885	Pentatricopeptide_repeat	239	284
IPR002885	Pentatricopeptide_repeat	434	482
IPR002885	Pentatricopeptide_repeat	294	352
IPR002885	Pentatricopeptide_repeat	308	342
IPR002885	Pentatricopeptide_repeat	204	237
IPR002885	Pentatricopeptide_repeat	238	265
IPR002885	Pentatricopeptide_repeat	169	202
IPR002885	Pentatricopeptide_repeat	379	411
IPR002885	Pentatricopeptide_repeat	449	481
IPR002885	Pentatricopeptide_repeat	343	376
IPR002885	Pentatricopeptide_repeat	414	446

External Links

No external refs found!