Description : cotton fiber protein
Gene families : OG_02_0001740 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000002655 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_4 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| SOLTUB.AGRIA.G00000002657 | No alias | cotton fiber protein | 0.02 | Orthogroups with 8 Potato genotypes |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000160 | phosphorelay signal transduction system | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000302 | response to reactive oxygen species | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000976 | transcription cis-regulatory region binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000987 | cis-regulatory region sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001067 | transcription regulatory region nucleic acid binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001101 | response to acid chemical | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001558 | regulation of cell growth | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0002218 | activation of innate immune response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0002239 | response to oomycetes | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0002252 | immune effector process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0002376 | immune system process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0002679 | respiratory burst involved in defense response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0002682 | regulation of immune system process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0002683 | negative regulation of immune system process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0002684 | positive regulation of immune system process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0002833 | positive regulation of response to biotic stimulus | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004722 | protein serine/threonine phosphatase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005509 | calcium ion binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005618 | cell wall | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005634 | nucleus | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005794 | Golgi apparatus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006073 | cellular glucan metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006470 | protein dephosphorylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006950 | response to stress | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006952 | defense response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007165 | signal transduction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009266 | response to temperature stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009314 | response to radiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009408 | response to heat | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009409 | response to cold | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009414 | response to water deprivation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009415 | response to water | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009416 | response to light stimulus | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009505 | plant-type cell wall | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009605 | response to external stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009607 | response to biotic stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009611 | response to wounding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009612 | response to mechanical stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009620 | response to fungus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009628 | response to abiotic stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009631 | cold acclimation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009642 | response to light intensity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009646 | response to absence of light | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009648 | photoperiodism | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009687 | abscisic acid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009719 | response to endogenous stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009725 | response to hormone | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009733 | response to auxin | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009738 | abscisic acid-activated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009741 | response to brassinosteroid | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009755 | hormone-mediated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009789 | positive regulation of abscisic acid-activated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009832 | plant-type cell wall biogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009834 | plant-type secondary cell wall biogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009846 | pollen germination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009866 | induced systemic resistance, ethylene mediated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009873 | ethylene-activated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009909 | regulation of flower development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010033 | response to organic substance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010035 | response to inorganic substance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010100 | negative regulation of photomorphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010193 | response to ozone | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010200 | response to chitin | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010218 | response to far red light | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010243 | response to organonitrogen compound | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010371 | regulation of gibberellin biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010383 | cell wall polysaccharide metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010410 | hemicellulose metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010411 | xyloglucan metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010440 | stomatal lineage progression | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010565 | regulation of cellular ketone metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010628 | positive regulation of gene expression | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0015629 | actin cytoskeleton | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016143 | S-glycoside metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016311 | dephosphorylation | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016762 | xyloglucan:xyloglucosyl transferase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019216 | regulation of lipid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019747 | regulation of isoprenoid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019757 | glycosinolate metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019760 | glucosinolate metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019953 | sexual reproduction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030218 | erythrocyte differentiation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030312 | external encapsulating structure | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031347 | regulation of defense response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031349 | positive regulation of defense response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032103 | positive regulation of response to external stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032870 | cellular response to hormone stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033993 | response to lipid | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0040034 | regulation of development, heterochronic | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042221 | response to chemical | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042542 | response to hydrogen peroxide | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042546 | cell wall biogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043207 | response to external biotic stimulus | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043288 | apocarotenoid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043455 | regulation of secondary metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044042 | glucan metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044085 | cellular component biogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044419 | biological process involved in interspecies interaction between organisms | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045088 | regulation of innate immune response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045089 | positive regulation of innate immune response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046890 | regulation of lipid biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0048046 | apoplast | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048506 | regulation of timing of meristematic phase transition | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048509 | regulation of meristem development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048510 | regulation of timing of transition from vegetative to reproductive phase | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048518 | positive regulation of biological process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048522 | positive regulation of cellular process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048571 | long-day photoperiodism | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048573 | photoperiodism, flowering | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048574 | long-day photoperiodism, flowering | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048585 | negative regulation of response to stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048736 | appendage development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048767 | root hair elongation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048831 | regulation of shoot system development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050776 | regulation of immune response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050777 | negative regulation of immune response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050778 | positive regulation of immune response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050789 | regulation of biological process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050794 | regulation of cellular process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050826 | response to freezing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050832 | defense response to fungus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050896 | response to stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051365 | cellular response to potassium ion starvation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051510 | regulation of unidimensional cell growth | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051592 | response to calcium ion | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051707 | response to other organism | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051865 | protein autoubiquitination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060173 | limb development | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0062012 | regulation of small molecule metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070696 | transmembrane receptor protein serine/threonine kinase binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071310 | cellular response to organic substance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071365 | cellular response to auxin stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071554 | cell wall organization or biogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071669 | plant-type cell wall organization or biogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0080022 | primary root development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0080134 | regulation of response to stress | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0080142 | regulation of salicylic acid biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0080164 | regulation of nitric oxide metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0098542 | defense response to other organism | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901657 | glycosyl compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901698 | response to nitrogen compound | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901700 | response to oxygen-containing compound | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902458 | positive regulation of stomatal opening | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904276 | regulation of wax biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904278 | positive regulation of wax biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1990359 | stress response to zinc ion | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1990532 | stress response to nickel ion | IEP | Predict GO terms from Neighborhoods |
| MF | GO:1990837 | sequence-specific double-stranded DNA binding | IEP | Predict GO terms from Neighborhoods |
No InterPro domains available for this sequence
| No external refs found! |