SOLTUB.AGRIA.G00000026006

Description : Polynucleotidyl transferase ribonuclease H-like superfamily protein

Gene families : OG_02_0015903 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000026006
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_39

Type	GO Term	Name	Evidence	Source
MF	GO:0000175	3'-5'-exoribonuclease activity	IEA	AHRD
BP	GO:0000459	exonucleolytic trimming involved in rRNA processing	None	Extended
BP	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA	AHRD
BP	GO:0000469	cleavage involved in rRNA processing	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004527	exonuclease activity	None	Extended
MF	GO:0004532	exoribonuclease activity	None	Extended
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008408	3'-5' exonuclease activity	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEA	AHRD
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031125	rRNA 3'-end processing	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	IEA	AHRD
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043628	small regulatory ncRNA 3'-end processing	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	IEA	AHRD
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0090501	RNA phosphodiester bond hydrolysis	None	Extended
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEA	AHRD
BP	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004019	adenylosuccinate synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004845	uracil phosphoribosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005345	purine nucleobase transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005350	pyrimidine nucleobase transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005507	copper ion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006167	AMP biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006222	UMP biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006223	uracil salvage	IEP	Predict GO terms from Neighborhoods
BP	GO:0006553	lysine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006814	sodium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006863	purine nucleobase transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0008483	transaminase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008643	carbohydrate transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0008655	pyrimidine-containing compound salvage	IEP	Predict GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009085	lysine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Predict GO terms from Neighborhoods
BP	GO:0009112	nucleobase metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009116	nucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009117	nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009119	ribonucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009129	pyrimidine nucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009130	pyrimidine nucleoside monophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009163	nucleoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009165	nucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009173	pyrimidine ribonucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009174	pyrimidine ribonucleoside monophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009259	ribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009507	chloroplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009527	plastid outer membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009536	plastid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009863	salicylic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0009925	basal plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0010138	pyrimidine ribonucleotide salvage	IEP	Predict GO terms from Neighborhoods
MF	GO:0010285	L,L-diaminopimelate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015145	monosaccharide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015205	nucleobase transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015207	adenine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015208	guanine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015210	uracil transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015293	symporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015294	solute:cation symporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015851	nucleobase transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015853	adenine transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015854	guanine transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015855	pyrimidine nucleobase transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015857	uracil transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0016763	pentosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019637	organophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019693	ribose phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019860	uracil metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0019867	outer membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0030170	pyridoxal phosphate binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031968	organelle outer membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032262	pyrimidine nucleotide salvage	IEP	Predict GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0034404	nucleobase-containing small molecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035344	hypoxanthine transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042278	purine nucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042451	purine nucleoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043094	cellular metabolic compound salvage	IEP	Predict GO terms from Neighborhoods
BP	GO:0043100	pyrimidine nucleobase salvage	IEP	Predict GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043173	nucleotide salvage	IEP	Predict GO terms from Neighborhoods
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044206	UMP salvage	IEP	Predict GO terms from Neighborhoods
BP	GO:0044208	'de novo' AMP biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044283	small molecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046033	AMP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046040	IMP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046049	UMP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046085	adenosine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046086	adenosine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046107	uracil biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046112	nucleobase biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046129	purine ribonucleoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046451	diaminopimelate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0051119	sugar transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051180	vitamin transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0062034	L-pipecolic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0062045	L-lysine alpha-aminotransferase	IEP	Predict GO terms from Neighborhoods
MF	GO:0070279	vitamin B6 binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0071702	organic substance transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072530	purine-containing compound transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072531	pyrimidine-containing compound transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0090407	organophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0090482	vitamin transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0098657	import into cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0098702	adenine import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0098710	guanine import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0098721	uracil import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0098739	import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901657	glycosyl compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903716	guanine transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903791	uracil transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1904082	pyrimidine nucleobase transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1904823	purine nucleobase transmembrane transport	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR013520	Exonuclease_RNaseT/DNA_pol3	113	283
IPR012337	RNaseH-like_sf	105	291

External Links

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SOLTUB.AGRIA.G00000026006

Expression Profile

Co-expression Networks

Functional Annotation