SOLTUB.AGRIA.G00000026060

Description : Regulator of chromosome condensation (RCC1) family protein

Gene families : OG_02_0001780 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000026060
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_81

Type	GO Term	Name	Evidence	Source
BP	GO:0003008	system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	AHRD
CC	GO:0005730	nucleolus	IEA	AHRD
CC	GO:0005737	cytoplasm	IEA	AHRD
CC	GO:0005815	microtubule organizing center	IEA	AHRD
CC	GO:0005929	cilium	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008104	protein localization	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
CC	GO:0012505	endomembrane system	IEA	AHRD
CC	GO:0016020	membrane	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016740	transferase activity	IEA	AHRD
MF	GO:0019899	enzyme binding	IEA	AHRD
BP	GO:0022607	cellular component assembly	IEA	AHRD
BP	GO:0030030	cell projection organization	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030182	neuron differentiation	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
CC	GO:0042995	cell projection	None	Extended
CC	GO:0043005	neuron projection	None	Extended
MF	GO:0043167	ion binding	IEA	AHRD
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044782	cilium organization	IEA	AHRD
BP	GO:0048513	animal organ development	IEA	AHRD
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	IEA	AHRD
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050877	nervous system process	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	IEA	AHRD
BP	GO:0051641	cellular localization	IEA	AHRD
BP	GO:0051716	cellular response to stimulus	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0097730	non-motile cilium	None	Extended
CC	GO:0097731	9+0 non-motile cilium	None	Extended
CC	GO:0097733	photoreceptor cell cilium	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended
BP	GO:0120036	plasma membrane bounded cell projection organization	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0000226	microtubule cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0001558	regulation of cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0001934	positive regulation of protein phosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0004672	protein kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004707	MAP kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005876	spindle microtubule	IEP	Predict GO terms from Neighborhoods
CC	GO:0005881	cytoplasmic microtubule	IEP	Predict GO terms from Neighborhoods
BP	GO:0006468	protein phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006479	protein methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006901	vesicle coating	IEP	Predict GO terms from Neighborhoods
BP	GO:0007010	cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007017	microtubule-based process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007020	microtubule nucleation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007030	Golgi organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007051	spindle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007622	rhythmic behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0008213	protein alkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0008361	regulation of cell size	IEP	Predict GO terms from Neighborhoods
BP	GO:0009850	auxin metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016413	O-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018105	peptidyl-serine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018193	peptidyl-amino acid modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0018209	peptidyl-serine modification	IEP	Predict GO terms from Neighborhoods
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0030031	cell projection assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0030111	regulation of Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0030177	positive regulation of Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0030178	negative regulation of Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0030426	growth cone	IEP	Predict GO terms from Neighborhoods
BP	GO:0030865	cortical cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031122	cytoplasmic microtubule organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032091	negative regulation of protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032434	regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032922	circadian regulation of gene expression	IEP	Predict GO terms from Neighborhoods
CC	GO:0033116	endoplasmic reticulum-Golgi intermediate compartment membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0033993	response to lipid	IEP	Predict GO terms from Neighborhoods
BP	GO:0034067	protein localization to Golgi apparatus	IEP	Predict GO terms from Neighborhoods
CC	GO:0036064	ciliary basal body	IEP	Predict GO terms from Neighborhoods
BP	GO:0036211	protein modification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042752	regulation of circadian rhythm	IEP	Predict GO terms from Neighborhoods
CC	GO:0043025	neuronal cell body	IEP	Predict GO terms from Neighborhoods
BP	GO:0043393	regulation of protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043622	cortical microtubule organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0044380	protein localization to cytoskeleton	IEP	Predict GO terms from Neighborhoods
BP	GO:0045664	regulation of neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045666	positive regulation of neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046777	protein autophosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048208	COPII vesicle coating	IEP	Predict GO terms from Neighborhoods
BP	GO:0048512	circadian behavior	IEP	Predict GO terms from Neighborhoods
MF	GO:0050321	tau-protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051100	negative regulation of binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051128	regulation of cellular component organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051225	spindle assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0055028	cortical microtubule	IEP	Predict GO terms from Neighborhoods
BP	GO:0060271	cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0060828	regulation of canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0061512	protein localization to cilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0070848	response to growth factor	IEP	Predict GO terms from Neighborhoods
BP	GO:0071363	cellular response to growth factor stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071539	protein localization to centrosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0072698	protein localization to microtubule cytoskeleton	IEP	Predict GO terms from Neighborhoods
BP	GO:0090263	positive regulation of canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0090395	plant cell papilla	IEP	Predict GO terms from Neighborhoods
CC	GO:0090397	stigma papilla	IEP	Predict GO terms from Neighborhoods
BP	GO:0097435	supramolecular fiber organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0106310	protein serine kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0120031	plasma membrane bounded cell projection assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1900063	regulation of peroxisome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1900064	positive regulation of peroxisome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1901800	positive regulation of proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902003	regulation of amyloid-beta formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902004	positive regulation of amyloid-beta formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902991	regulation of amyloid precursor protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902993	positive regulation of amyloid precursor protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903052	positive regulation of proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904338	regulation of dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904340	positive regulation of dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904956	regulation of midbrain dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904958	positive regulation of midbrain dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905424	regulation of Wnt-mediated midbrain dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905426	positive regulation of Wnt-mediated midbrain dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905508	protein localization to microtubule organizing center	IEP	Predict GO terms from Neighborhoods
BP	GO:1905515	non-motile cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1990089	response to nerve growth factor	IEP	Predict GO terms from Neighborhoods
BP	GO:1990090	cellular response to nerve growth factor stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:2000050	regulation of non-canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2000052	positive regulation of non-canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2000060	positive regulation of ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000408	Reg_chr_condens	444	496
IPR000408	Reg_chr_condens	393	441
IPR000408	Reg_chr_condens	285	335
IPR000408	Reg_chr_condens	232	282
IPR000408	Reg_chr_condens	338	389
IPR009091	RCC1/BLIP-II	429	526
IPR009091	RCC1/BLIP-II	164	460

External Links

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SOLTUB.AGRIA.G00000026060

Expression Profile

Co-expression Networks

Functional Annotation