SOLTUB.AGRIA.G00000026421

Description : COP9 signalosome complex subunit 6a

Gene families : OG_02_0044154 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000026421
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_8

Type	GO Term	Name	Evidence	Source
BP	GO:0000338	protein deneddylation	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	AHRD
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007602	phototransduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0008180	COP9 signalosome	IEA	AHRD
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	IEA	AHRD
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009585	red, far-red light phototransduction	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010387	COP9 signalosome assembly	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0031410	cytoplasmic vesicle	IEA	AHRD
BP	GO:0031667	response to nutrient levels	None	Extended
CC	GO:0031982	vesicle	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042594	response to starvation	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0070122	obsolete isopeptidase activity	IEA	AHRD
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1990641	response to iron ion starvation	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Predict GO terms from Neighborhoods
BP	GO:0007623	circadian rhythm	IEP	Predict GO terms from Neighborhoods
BP	GO:0009639	response to red or far red light	IEP	Predict GO terms from Neighborhoods
BP	GO:0010017	red or far-red light signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0048511	rhythmic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048579	negative regulation of long-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0048581	negative regulation of post-embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048586	regulation of long-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0071478	cellular response to radiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071482	cellular response to light stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071489	cellular response to red or far red light	IEP	Predict GO terms from Neighborhoods
BP	GO:2000028	regulation of photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:2000242	negative regulation of reproductive process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000555	JAMM/MPN+_dom	22	56

External Links

No external refs found!

SOLTUB.AGRIA.G00000026421

Expression Profile

Co-expression Networks

Functional Annotation