SOLTUB.AGRIA.G00000026480

Description : Ribosomal RNA large subunit methyltransferase I

Gene families : OG_02_0010034 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000026480
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_155

Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	None	Extended
BP	GO:0001510	RNA methylation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008173	RNA methyltransferase activity	None	Extended
MF	GO:0008649	rRNA methyltransferase activity	None	Extended
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016434	rRNA (cytosine) methyltransferase activity	IEA	AHRD
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0031167	rRNA methylation	IEA	AHRD
BP	GO:0032259	methylation	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140102	catalytic activity, acting on a rRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002229	defense response to oomycetes	IEP	Predict GO terms from Neighborhoods
MF	GO:0004601	peroxidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005319	lipid transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009528	plastid inner membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009682	induced systemic resistance	IEP	Predict GO terms from Neighborhoods
CC	GO:0009706	chloroplast inner membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0010118	stomatal movement	IEP	Predict GO terms from Neighborhoods
MF	GO:0016209	antioxidant activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Predict GO terms from Neighborhoods
CC	GO:0019866	organelle inner membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032365	intracellular lipid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098869	cellular oxidant detoxification	IEP	Predict GO terms from Neighborhoods
BP	GO:1990748	cellular detoxification	IEP	Predict GO terms from Neighborhoods
BP	GO:2000022	regulation of jasmonic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2000071	regulation of defense response by callose deposition	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR015947	PUA-like_sf	36	104
IPR029063	SAM-dependent_MTases_sf	124	432
IPR019614	SAM-dep_methyl-trfase	224	394
IPR041532	RlmI_PUA-like	37	100

External Links

No external refs found!

SOLTUB.AGRIA.G00000026480

Expression Profile

Co-expression Networks

Functional Annotation