SOLTUB.AGRIA.G00000027176

Description : Serine racemase

Gene families : OG_02_0000595 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000027176
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_236

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0000287	magnesium ion binding	IEA	AHRD
BP	GO:0002237	response to molecule of bacterial origin	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003941	L-serine ammonia-lyase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	IEA	AHRD
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006081	cellular aldehyde metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006563	L-serine metabolic process	None	Extended
BP	GO:0006565	L-serine catabolic process	IEA	AHRD
BP	GO:0006575	cellular modified amino acid metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007420	brain development	IEA	AHRD
BP	GO:0007568	aging	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	cellular amino acid biosynthetic process	None	Extended
MF	GO:0008721	D-serine ammonia-lyase activity	IEA	AHRD
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009063	cellular amino acid catabolic process	None	Extended
BP	GO:0009069	serine family amino acid metabolic process	None	Extended
BP	GO:0009070	serine family amino acid biosynthetic process	None	Extended
BP	GO:0009071	serine family amino acid catabolic process	None	Extended
BP	GO:0009436	glyoxylate catabolic process	IEA	AHRD
BP	GO:0009441	glycolate metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0014072	response to isoquinoline alkaloid	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
MF	GO:0016594	glycine binding	IEA	AHRD
MF	GO:0016597	amino acid binding	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016836	hydro-lyase activity	IEA	AHRD
MF	GO:0016840	carbon-nitrogen lyase activity	None	Extended
MF	GO:0016841	ammonia-lyase activity	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016854	racemase and epimerase activity	None	Extended
MF	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0018114	threonine racemase activity	IEA	AHRD
BP	GO:0018249	protein dehydration	IEA	AHRD
BP	GO:0019478	D-amino acid catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0019842	vitamin binding	None	Extended
MF	GO:0019904	protein domain specific binding	None	Extended
MF	GO:0030165	PDZ domain binding	IEA	AHRD
MF	GO:0030170	pyridoxal phosphate binding	IEA	AHRD
MF	GO:0030378	serine racemase activity	IEA	AHRD
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030848	threo-3-hydroxyaspartate ammonia-lyase activity	IEA	AHRD
MF	GO:0031406	carboxylic acid binding	None	Extended
BP	GO:0032496	response to lipopolysaccharide	IEA	AHRD
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0034308	primary alcohol metabolic process	None	Extended
BP	GO:0034310	primary alcohol catabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
BP	GO:0036088	D-serine catabolic process	IEA	AHRD
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0036361	racemase activity, acting on amino acids and derivatives	None	Extended
BP	GO:0042219	cellular modified amino acid catabolic process	IEA	AHRD
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IEA	AHRD
BP	GO:0042866	pyruvate biosynthetic process	IEA	AHRD
CC	GO:0043025	neuronal cell body	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0043177	organic acid binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0043278	response to morphine	IEA	AHRD
BP	GO:0043279	response to alkaloid	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
MF	GO:0043621	protein self-association	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
CC	GO:0044297	cell body	None	Extended
CC	GO:0045177	apical part of cell	IEA	AHRD
BP	GO:0046164	alcohol catabolic process	None	Extended
BP	GO:0046185	aldehyde catabolic process	None	Extended
BP	GO:0046296	glycolate catabolic process	IEA	AHRD
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0046416	D-amino acid metabolic process	None	Extended
BP	GO:0046437	D-amino acid biosynthetic process	None	Extended
BP	GO:0046487	glyoxylate metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
MF	GO:0047661	amino-acid racemase activity	None	Extended
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0070178	D-serine metabolic process	None	Extended
BP	GO:0070179	D-serine biosynthetic process	IEA	AHRD
MF	GO:0070279	vitamin B6 binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072329	monocarboxylic acid catabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901606	alpha-amino acid catabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901616	organic hydroxy compound catabolic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006808	regulation of nitrogen utilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006829	zinc ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0008643	carbohydrate transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0009737	response to abscisic acid	IEP	Predict GO terms from Neighborhoods
BP	GO:0010187	negative regulation of seed germination	IEP	Predict GO terms from Neighborhoods
BP	GO:0010466	negative regulation of peptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010951	negative regulation of endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015145	monosaccharide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015749	monosaccharide transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0019208	phosphatase regulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019888	protein phosphatase regulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019902	phosphatase binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0019903	protein phosphatase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030307	positive regulation of cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0032006	regulation of TOR signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0032008	positive regulation of TOR signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0032104	regulation of response to extracellular stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0032107	regulation of response to nutrient levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0032872	regulation of stress-activated MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0032873	negative regulation of stress-activated MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0032886	regulation of microtubule-based process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034219	carbohydrate transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0034612	response to tumor necrosis factor	IEP	Predict GO terms from Neighborhoods
BP	GO:0035303	regulation of dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043154	negative regulation of cysteine-type endopeptidase activity involved in apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043281	regulation of cysteine-type endopeptidase activity involved in apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043409	negative regulation of MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0045861	negative regulation of proteolysis	IEP	Predict GO terms from Neighborhoods
MF	GO:0051119	sugar transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051346	negative regulation of hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0051721	protein phosphatase 2A binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0052547	regulation of peptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0052548	regulation of endopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060632	regulation of microtubule-based movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0070302	regulation of stress-activated protein kinase signaling cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0070303	negative regulation of stress-activated protein kinase signaling cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0070555	response to interleukin-1	IEP	Predict GO terms from Neighborhoods
BP	GO:2000116	regulation of cysteine-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:2000117	negative regulation of cysteine-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036052	Trypto_synt_PLP_dependent	16	83

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SOLTUB.AGRIA.G00000027176

Expression Profile

Co-expression Networks

Functional Annotation