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  5. SOLTUB.AGRIA.G00000002819

SOLTUB.AGRIA.G00000002819


Description : Pentatricopeptide repeat-containing protein


Gene families : OG_02_0005365 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000002819
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_83


Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA AHRD
BP GO:0006396 RNA processing IEA AHRD
CC GO:0043231 intracellular membrane-bounded organelle IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0000001 mitochondrion inheritance IEP Predict GO terms from Neighborhoods
MF GO:0000014 single-stranded DNA endodeoxyribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0000049 tRNA binding IEP Predict GO terms from Neighborhoods
CC GO:0000109 nucleotide-excision repair complex IEP Predict GO terms from Neighborhoods
CC GO:0000112 nucleotide-excision repair factor 3 complex IEP Predict GO terms from Neighborhoods
BP GO:0000280 nuclear division IEP Predict GO terms from Neighborhoods
MF GO:0000339 RNA cap binding IEP Predict GO terms from Neighborhoods
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Predict GO terms from Neighborhoods
CC GO:0000785 chromatin IEP Predict GO terms from Neighborhoods
CC GO:0000791 euchromatin IEP Predict GO terms from Neighborhoods
BP GO:0000959 mitochondrial RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0000963 mitochondrial RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0001510 RNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0002097 tRNA wobble base modification IEP Predict GO terms from Neighborhoods
BP GO:0002098 tRNA wobble uridine modification IEP Predict GO terms from Neighborhoods
BP GO:0002926 tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation IEP Predict GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003727 single-stranded RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0004520 endodeoxyribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004536 deoxyribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0005488 binding IEP Predict GO terms from Neighborhoods
CC GO:0005652 nuclear lamina IEP Predict GO terms from Neighborhoods
CC GO:0005654 nucleoplasm IEP Predict GO terms from Neighborhoods
CC GO:0005816 spindle pole body IEP Predict GO terms from Neighborhoods
CC GO:0005882 intermediate filament IEP Predict GO terms from Neighborhoods
BP GO:0006284 base-excision repair IEP Predict GO terms from Neighborhoods
BP GO:0006295 nucleotide-excision repair, DNA incision, 3'-to lesion IEP Predict GO terms from Neighborhoods
BP GO:0006366 transcription by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006400 tRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0006403 RNA localization IEP Predict GO terms from Neighborhoods
BP GO:0006446 regulation of translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0006974 cellular response to DNA damage stimulus IEP Predict GO terms from Neighborhoods
BP GO:0007566 embryo implantation IEP Predict GO terms from Neighborhoods
BP GO:0008033 tRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0008061 chitin binding IEP Predict GO terms from Neighborhoods
MF GO:0008097 5S rRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0008098 5S rRNA primary transcript binding IEP Predict GO terms from Neighborhoods
MF GO:0008173 RNA methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008175 tRNA methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008190 eukaryotic initiation factor 4E binding IEP Predict GO terms from Neighborhoods
BP GO:0008284 positive regulation of cell population proliferation IEP Predict GO terms from Neighborhoods
BP GO:0008298 intracellular mRNA localization IEP Predict GO terms from Neighborhoods
MF GO:0008494 translation activator activity IEP Predict GO terms from Neighborhoods
BP GO:0009451 RNA modification IEP Predict GO terms from Neighborhoods
BP GO:0009892 negative regulation of metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009894 regulation of catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009895 negative regulation of catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009965 leaf morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010212 response to ionizing radiation IEP Predict GO terms from Neighborhoods
BP GO:0010213 non-photoreactive DNA repair IEP Predict GO terms from Neighborhoods
CC GO:0010369 chromocenter IEP Predict GO terms from Neighborhoods
BP GO:0010467 gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010609 mRNA localization resulting in post-transcriptional regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010712 regulation of collagen metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010714 positive regulation of collagen metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010821 regulation of mitochondrion organization IEP Predict GO terms from Neighborhoods
BP GO:0010822 positive regulation of mitochondrion organization IEP Predict GO terms from Neighborhoods
BP GO:0010928 regulation of auxin mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016073 snRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016180 snRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0016239 positive regulation of macroautophagy IEP Predict GO terms from Neighborhoods
BP GO:0016241 regulation of macroautophagy IEP Predict GO terms from Neighborhoods
BP GO:0016572 obsolete histone phosphorylation IEP Predict GO terms from Neighborhoods
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Predict GO terms from Neighborhoods
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predict GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0017108 5'-flap endonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0030488 tRNA methylation IEP Predict GO terms from Neighborhoods
CC GO:0030895 apolipoprotein B mRNA editing enzyme complex IEP Predict GO terms from Neighborhoods
CC GO:0031315 extrinsic component of mitochondrial outer membrane IEP Predict GO terms from Neighborhoods
BP GO:0031329 regulation of cellular catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031330 negative regulation of cellular catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0031369 translation initiation factor binding IEP Predict GO terms from Neighborhoods
BP GO:0031537 regulation of anthocyanin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031538 negative regulation of anthocyanin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031590 wybutosine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031591 wybutosine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0031929 TOR signaling IEP Predict GO terms from Neighborhoods
CC GO:0031981 nuclear lumen IEP Predict GO terms from Neighborhoods
CC GO:0032039 integrator complex IEP Predict GO terms from Neighborhoods
BP GO:0032259 methylation IEP Predict GO terms from Neighborhoods
BP GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032897 negative regulation of viral transcription IEP Predict GO terms from Neighborhoods
BP GO:0032965 regulation of collagen biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0032967 positive regulation of collagen biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Predict GO terms from Neighborhoods
CC GO:0033588 elongator holoenzyme complex IEP Predict GO terms from Neighborhoods
BP GO:0033683 nucleotide-excision repair, DNA incision IEP Predict GO terms from Neighborhoods
MF GO:0034046 poly(G) binding IEP Predict GO terms from Neighborhoods
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0034472 snRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0035173 histone kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0035174 histone serine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0035265 organ growth IEP Predict GO terms from Neighborhoods
MF GO:0035613 RNA stem-loop binding IEP Predict GO terms from Neighborhoods
BP GO:0036297 interstrand cross-link repair IEP Predict GO terms from Neighborhoods
CC GO:0036477 somatodendritic compartment IEP Predict GO terms from Neighborhoods
BP GO:0038202 TORC1 signaling IEP Predict GO terms from Neighborhoods
BP GO:0040031 snRNA modification IEP Predict GO terms from Neighborhoods
MF GO:0043024 ribosomal small subunit binding IEP Predict GO terms from Neighborhoods
BP GO:0043412 macromolecule modification IEP Predict GO terms from Neighborhoods
BP GO:0043414 macromolecule methylation IEP Predict GO terms from Neighborhoods
BP GO:0043487 regulation of RNA stability IEP Predict GO terms from Neighborhoods
BP GO:0043488 regulation of mRNA stability IEP Predict GO terms from Neighborhoods
BP GO:0043489 RNA stabilization IEP Predict GO terms from Neighborhoods
BP GO:0043578 nuclear matrix organization IEP Predict GO terms from Neighborhoods
BP GO:0045069 regulation of viral genome replication IEP Predict GO terms from Neighborhoods
BP GO:0045070 positive regulation of viral genome replication IEP Predict GO terms from Neighborhoods
CC GO:0045293 mRNA editing complex IEP Predict GO terms from Neighborhoods
BP GO:0045472 response to ether IEP Predict GO terms from Neighborhoods
BP GO:0045727 positive regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0045740 positive regulation of DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0045947 negative regulation of translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0045948 positive regulation of translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0046579 positive regulation of Ras protein signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0046782 regulation of viral transcription IEP Predict GO terms from Neighborhoods
MF GO:0048027 mRNA 5'-UTR binding IEP Predict GO terms from Neighborhoods
BP GO:0048255 mRNA stabilization IEP Predict GO terms from Neighborhoods
MF GO:0048256 flap endonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0048285 organelle fission IEP Predict GO terms from Neighborhoods
BP GO:0048308 organelle inheritance IEP Predict GO terms from Neighborhoods
BP GO:0048311 mitochondrion distribution IEP Predict GO terms from Neighborhoods
BP GO:0048524 positive regulation of viral process IEP Predict GO terms from Neighborhoods
BP GO:0048525 negative regulation of viral process IEP Predict GO terms from Neighborhoods
BP GO:0048530 fruit morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050714 positive regulation of protein secretion IEP Predict GO terms from Neighborhoods
BP GO:0051057 positive regulation of small GTPase mediated signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0051247 positive regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051261 protein depolymerization IEP Predict GO terms from Neighborhoods
BP GO:0060147 regulation of post-transcriptional gene silencing IEP Predict GO terms from Neighborhoods
BP GO:0060966 regulation of gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:0061013 regulation of mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0071219 cellular response to molecule of bacterial origin IEP Predict GO terms from Neighborhoods
BP GO:0071323 cellular response to chitin IEP Predict GO terms from Neighborhoods
BP GO:0071362 cellular response to ether IEP Predict GO terms from Neighborhoods
BP GO:0071417 cellular response to organonitrogen compound IEP Predict GO terms from Neighborhoods
BP GO:0071478 cellular response to radiation IEP Predict GO terms from Neighborhoods
BP GO:0071479 cellular response to ionizing radiation IEP Predict GO terms from Neighborhoods
BP GO:0071480 cellular response to gamma radiation IEP Predict GO terms from Neighborhoods
BP GO:0072318 clathrin coat disassembly IEP Predict GO terms from Neighborhoods
BP GO:0072319 vesicle uncoating IEP Predict GO terms from Neighborhoods
BP GO:0072583 clathrin-dependent endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0072752 cellular response to rapamycin IEP Predict GO terms from Neighborhoods
BP GO:0080178 5-carbamoylmethyl uridine residue modification IEP Predict GO terms from Neighborhoods
BP GO:0090296 regulation of mitochondrial DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0090297 positive regulation of mitochondrial DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0090615 mitochondrial mRNA processing IEP Predict GO terms from Neighborhoods
CC GO:0097255 R2TP complex IEP Predict GO terms from Neighborhoods
BP GO:0097298 regulation of nucleus size IEP Predict GO terms from Neighborhoods
BP GO:0106349 snRNA methylation IEP Predict GO terms from Neighborhoods
CC GO:0120259 7SK snRNP IEP Predict GO terms from Neighborhoods
BP GO:0140053 mitochondrial gene expression IEP Predict GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:1900368 regulation of post-transcriptional gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:1901355 response to rapamycin IEP Predict GO terms from Neighborhoods
BP GO:1901655 cellular response to ketone IEP Predict GO terms from Neighborhoods
BP GO:1901699 cellular response to nitrogen compound IEP Predict GO terms from Neighborhoods
BP GO:1901799 negative regulation of proteasomal protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901858 regulation of mitochondrial DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901860 positive regulation of mitochondrial DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902369 negative regulation of RNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902373 negative regulation of mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902415 regulation of mRNA binding IEP Predict GO terms from Neighborhoods
BP GO:1902416 positive regulation of mRNA binding IEP Predict GO terms from Neighborhoods
BP GO:1903311 regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903312 negative regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903900 regulation of viral life cycle IEP Predict GO terms from Neighborhoods
BP GO:1905214 regulation of RNA binding IEP Predict GO terms from Neighborhoods
BP GO:1905216 positive regulation of RNA binding IEP Predict GO terms from Neighborhoods
BP GO:1990437 snRNA 2'-O-methylation IEP Predict GO terms from Neighborhoods
BP GO:1990438 U6 2'-O-snRNA methylation IEP Predict GO terms from Neighborhoods
MF GO:1990825 sequence-specific mRNA binding IEP Predict GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
BP GO:1990928 response to amino acid starvation IEP Predict GO terms from Neighborhoods
BP GO:2000024 regulation of leaf development IEP Predict GO terms from Neighborhoods
BP GO:2000059 negative regulation of ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000105 positive regulation of DNA-templated DNA replication IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR011990 TPR-like_helical_dom_sf 291 641
IPR002885 Pentatricopeptide_repeat 502 529
IPR002885 Pentatricopeptide_repeat 636 668
IPR002885 Pentatricopeptide_repeat 391 419
IPR033443 PPR_long 272 376
IPR002885 Pentatricopeptide_repeat 219 268
IPR002885 Pentatricopeptide_repeat 293 326
IPR002885 Pentatricopeptide_repeat 502 535
IPR002885 Pentatricopeptide_repeat 643 672
IPR002885 Pentatricopeptide_repeat 328 360
IPR002885 Pentatricopeptide_repeat 398 430
IPR002885 Pentatricopeptide_repeat 363 395
IPR002885 Pentatricopeptide_repeat 223 253
IPR002885 Pentatricopeptide_repeat 258 291
No external refs found!