SOLTUB.AGRIA.G00000027233

Description : Zinc finger protein

Gene families : OG_02_0016035 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000027233
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_46

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009536	plastid	IEA	AHRD
CC	GO:0009570	chloroplast stroma	IEA	AHRD
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009658	chloroplast organization	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1900865	chloroplast RNA modification	None	Extended
BP	GO:1900871	chloroplast mRNA modification	IEA	AHRD
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	IEP	Predict GO terms from Neighborhoods
CC	GO:0000177	cytoplasmic exosome (RNase complex)	IEP	Predict GO terms from Neighborhoods
CC	GO:0000178	exosome (RNase complex)	IEP	Predict GO terms from Neighborhoods
CC	GO:0000262	mitochondrial chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0000408	EKC/KEOPS complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000957	mitochondrial RNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000958	mitochondrial mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000960	regulation of mitochondrial RNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000962	positive regulation of mitochondrial RNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000965	mitochondrial RNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0001410	chlamydospore formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001889	liver development	IEP	Predict GO terms from Neighborhoods
MF	GO:0002039	p53 binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003678	DNA helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003724	RNA helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003725	double-stranded RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005319	lipid transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006378	mRNA polyadenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006402	mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007005	mitochondrion organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008028	monocarboxylic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009060	aerobic respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0009268	response to pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0009561	megagametogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0009897	external side of plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009939	positive regulation of gibberellic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010025	wax biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010166	wax metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010222	stem vascular tissue pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010257	NADH dehydrogenase complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0010570	regulation of filamentous growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010929	positive regulation of auxin mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0015245	fatty acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015562	efflux transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015908	fatty acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	Predict GO terms from Neighborhoods
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Predict GO terms from Neighborhoods
BP	GO:0016925	protein sumoylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0019948	SUMO activating enzyme activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019954	asexual reproduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0030435	sporulation resulting in formation of a cellular spore	IEP	Predict GO terms from Neighborhoods
BP	GO:0030436	asexual sporulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030447	filamentous growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0031123	RNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031124	mRNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0031974	membrane-enclosed lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032392	DNA geometric change	IEP	Predict GO terms from Neighborhoods
BP	GO:0032508	DNA duplex unwinding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032981	mitochondrial respiratory chain complex I assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0032989	cellular component morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0032990	cell part morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0033108	mitochondrial respiratory chain complex assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0034458	3'-5' RNA helicase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035945	mitochondrial ncRNA surveillance	IEP	Predict GO terms from Neighborhoods
BP	GO:0035946	mitochondrial mRNA surveillance	IEP	Predict GO terms from Neighborhoods
BP	GO:0036177	filamentous growth of a population of unicellular organisms in response to pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0036180	filamentous growth of a population of unicellular organisms in response to biotic stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0036187	cell growth mode switching, budding to filamentous	IEP	Predict GO terms from Neighborhoods
BP	GO:0042335	cuticle development	IEP	Predict GO terms from Neighborhoods
BP	GO:0042710	biofilm formation	IEP	Predict GO terms from Neighborhoods
MF	GO:0042803	protein homodimerization activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0043233	organelle lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0043631	RNA polyadenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043936	asexual sporulation resulting in formation of a cellular spore	IEP	Predict GO terms from Neighborhoods
BP	GO:0044010	single-species biofilm formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044011	single-species biofilm formation on inanimate substrate	IEP	Predict GO terms from Neighborhoods
BP	GO:0044182	filamentous growth of a population of unicellular organisms	IEP	Predict GO terms from Neighborhoods
BP	GO:0044528	regulation of mitochondrial mRNA stability	IEP	Predict GO terms from Neighborhoods
CC	GO:0045025	mitochondrial degradosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0045333	cellular respiration	IEP	Predict GO terms from Neighborhoods
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0062125	regulation of mitochondrial gene expression	IEP	Predict GO terms from Neighborhoods
CC	GO:0070013	intracellular organelle lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0070129	regulation of mitochondrial translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0070131	positive regulation of mitochondrial translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0070525	tRNA threonylcarbamoyladenosine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070584	mitochondrion morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0070784	regulation of growth of unicellular organism as a thread of attached cells	IEP	Predict GO terms from Neighborhoods
BP	GO:0070827	obsolete chromatin maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0071025	RNA surveillance	IEP	Predict GO terms from Neighborhoods
BP	GO:0071026	cytoplasmic RNA surveillance	IEP	Predict GO terms from Neighborhoods
BP	GO:0071103	DNA conformation change	IEP	Predict GO terms from Neighborhoods
BP	GO:0071467	cellular response to pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0080036	regulation of cytokinin-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0080038	positive regulation of cytokinin-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0080051	cutin transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0080172	petal epidermis patterning	IEP	Predict GO terms from Neighborhoods
BP	GO:0090605	submerged biofilm formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090609	single-species submerged biofilm formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090615	mitochondrial mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0090616	mitochondrial mRNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0090646	mitochondrial tRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0097222	mitochondrial mRNA polyadenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0098630	aggregation of unicellular organisms	IEP	Predict GO terms from Neighborhoods
BP	GO:0098743	cell aggregation	IEP	Predict GO terms from Neighborhoods
MF	GO:0140359	ABC-type transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900428	regulation of filamentous growth of a population of unicellular organisms	IEP	Predict GO terms from Neighborhoods
BP	GO:1901570	fatty acid derivative biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902584	positive regulation of response to water deprivation	IEP	Predict GO terms from Neighborhoods
CC	GO:1905354	exoribonuclease complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2000827	mitochondrial RNA surveillance	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036443	Znf_RanBP2_sf	249	282
IPR001876	Znf_RanBP2	256	280
IPR001876	Znf_RanBP2	299	322
IPR036443	Znf_RanBP2_sf	294	327

External Links

No external refs found!

SOLTUB.AGRIA.G00000027233

Expression Profile

Co-expression Networks

Functional Annotation