SOLTUB.AGRIA.G00000027472

Description : Pentatricopeptide repeat-containing protein, putative

Gene families : OG_02_0020510 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000027472
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_237

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010467	gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140053	mitochondrial gene expression	IEA	AHRD
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000076	DNA replication checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0000077	DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0000082	G1/S transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000278	mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0000373	Group II intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Predict GO terms from Neighborhoods
BP	GO:0000731	DNA synthesis involved in DNA repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0000920	septum digestion after cytokinesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0000966	RNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0001411	hyphal tip	IEP	Predict GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004016	adenylate cyclase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004518	nuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004529	exodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004536	deoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005657	replication fork	IEP	Predict GO terms from Neighborhoods
CC	GO:0005933	cellular bud	IEP	Predict GO terms from Neighborhoods
CC	GO:0005935	cellular bud neck	IEP	Predict GO terms from Neighborhoods
CC	GO:0005938	cell cortex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006261	DNA-templated DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006270	DNA replication initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006271	DNA strand elongation involved in DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006272	leading strand elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006279	premeiotic DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006287	base-excision repair, gap-filling	IEP	Predict GO terms from Neighborhoods
BP	GO:0006297	nucleotide-excision repair, DNA gap filling	IEP	Predict GO terms from Neighborhoods
BP	GO:0006301	postreplication repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	Predict GO terms from Neighborhoods
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007049	cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0007062	sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007113	endomitotic cell cycle	IEP	Predict GO terms from Neighborhoods
MF	GO:0008296	3'-5'-exodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008297	single-stranded DNA exodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008310	single-stranded DNA 3'-5' exodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008360	regulation of cell shape	IEP	Predict GO terms from Neighborhoods
MF	GO:0008408	3'-5' exonuclease activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0008622	epsilon DNA polymerase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0008841	dihydrofolate synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009268	response to pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0010086	embryonic root morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010239	chloroplast mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0010570	regulation of filamentous growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0010972	negative regulation of G2/M transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
CC	GO:0015629	actin cytoskeleton	IEP	Predict GO terms from Neighborhoods
BP	GO:0016071	mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016556	mRNA modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Predict GO terms from Neighborhoods
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016881	acid-amino acid ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016895	exodeoxyribonuclease activity, producing 5'-phosphomonoesters	IEP	Predict GO terms from Neighborhoods
BP	GO:0019985	translesion synthesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	Predict GO terms from Neighborhoods
BP	GO:0022604	regulation of cell morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0022616	DNA strand elongation	IEP	Predict GO terms from Neighborhoods
CC	GO:0030427	site of polarized growth	IEP	Predict GO terms from Neighborhoods
CC	GO:0030428	cell septum	IEP	Predict GO terms from Neighborhoods
BP	GO:0030447	filamentous growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0030866	cortical actin cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030950	establishment or maintenance of actin cytoskeleton polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030952	establishment or maintenance of cytoskeleton polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:0031048	small non-coding RNA-dependent heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031505	fungal-type cell wall organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031570	DNA integrity checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0031573	mitotic intra-S DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0031579	membrane raft organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0032153	cell division site	IEP	Predict GO terms from Neighborhoods
MF	GO:0032183	SUMO binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032655	regulation of interleukin-12 production	IEP	Predict GO terms from Neighborhoods
BP	GO:0032878	regulation of establishment or maintenance of cell polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:0033260	nuclear DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0033314	mitotic DNA replication checkpoint signaling	IEP	Predict GO terms from Neighborhoods
MF	GO:0034061	DNA polymerase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0035618	root hair	IEP	Predict GO terms from Neighborhoods
BP	GO:0035822	gene conversion	IEP	Predict GO terms from Neighborhoods
BP	GO:0035825	homologous recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0036170	filamentous growth of a population of unicellular organisms in response to starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0036176	response to neutral pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0036180	filamentous growth of a population of unicellular organisms in response to biotic stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0036244	cellular response to neutral pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0042276	error-prone translesion synthesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0042575	DNA polymerase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0042770	signal transduction in response to DNA damage	IEP	Predict GO terms from Neighborhoods
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044182	filamentous growth of a population of unicellular organisms	IEP	Predict GO terms from Neighborhoods
BP	GO:0044773	mitotic DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0044774	mitotic DNA integrity checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0044786	cell cycle DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0044818	mitotic G2/M transition checkpoint	IEP	Predict GO terms from Neighborhoods
BP	GO:0044843	cell cycle G1/S phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0045004	DNA replication proofreading	IEP	Predict GO terms from Neighborhoods
BP	GO:0045005	DNA-templated DNA replication maintenance of fidelity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045292	mRNA cis splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0048515	spermatid differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048564	photosystem I assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0048579	negative regulation of long-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0051278	fungal-type cell wall polysaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0051286	cell tip	IEP	Predict GO terms from Neighborhoods
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0055047	generative cell mitosis	IEP	Predict GO terms from Neighborhoods
CC	GO:0060187	cell pole	IEP	Predict GO terms from Neighborhoods
BP	GO:0061806	regulation of DNA recombination at centromere	IEP	Predict GO terms from Neighborhoods
CC	GO:0062039	biofilm matrix	IEP	Predict GO terms from Neighborhoods
CC	GO:0062040	fungal biofilm matrix	IEP	Predict GO terms from Neighborhoods
BP	GO:0070726	cell wall assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0070868	obsolete heterochromatin organization involved in chromatin silencing	IEP	Predict GO terms from Neighborhoods
BP	GO:0071163	DNA replication preinitiation complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0071467	cellular response to pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0071852	fungal-type cell wall organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0071897	DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071940	fungal-type cell wall assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0071966	fungal-type cell wall polysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0080009	mRNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0080165	callose deposition in phloem sieve plate	IEP	Predict GO terms from Neighborhoods
BP	GO:0090033	positive regulation of filamentous growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0090592	DNA synthesis involved in DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0090615	mitochondrial mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0090617	mitochondrial mRNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0140014	mitotic nuclear division	IEP	Predict GO terms from Neighborhoods
CC	GO:0140445	chromosome, telomeric repeat region	IEP	Predict GO terms from Neighborhoods
BP	GO:0140529	CMG complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1900190	regulation of single-species biofilm formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1900192	positive regulation of single-species biofilm formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1900231	regulation of single-species biofilm formation on inanimate substrate	IEP	Predict GO terms from Neighborhoods
BP	GO:1900233	positive regulation of single-species biofilm formation on inanimate substrate	IEP	Predict GO terms from Neighborhoods
BP	GO:1900428	regulation of filamentous growth of a population of unicellular organisms	IEP	Predict GO terms from Neighborhoods
BP	GO:1900430	positive regulation of filamentous growth of a population of unicellular organisms	IEP	Predict GO terms from Neighborhoods
BP	GO:1900431	regulation of filamentous growth of a population of unicellular organisms in response to heat	IEP	Predict GO terms from Neighborhoods
BP	GO:1900433	positive regulation of filamentous growth of a population of unicellular organisms in response to heat	IEP	Predict GO terms from Neighborhoods
BP	GO:1900440	regulation of filamentous growth of a population of unicellular organisms in response to neutral pH	IEP	Predict GO terms from Neighborhoods
BP	GO:1900442	positive regulation of filamentous growth of a population of unicellular organisms in response to neutral pH	IEP	Predict GO terms from Neighborhoods
BP	GO:1900741	regulation of filamentous growth of a population of unicellular organisms in response to pH	IEP	Predict GO terms from Neighborhoods
BP	GO:1900743	positive regulation of filamentous growth of a population of unicellular organisms in response to pH	IEP	Predict GO terms from Neighborhoods
BP	GO:1902292	cell cycle DNA replication initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902296	DNA strand elongation involved in cell cycle DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:1902315	nuclear cell cycle DNA replication initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902319	DNA strand elongation involved in nuclear cell cycle DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:1902750	negative regulation of cell cycle G2/M phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1902975	mitotic DNA replication initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902983	DNA strand elongation involved in mitotic DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:1903046	meiotic cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903047	mitotic cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903097	obsolete regulation of CENP-A containing nucleosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1903460	mitotic DNA replication leading strand elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905392	plant organ morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:2000099	regulation of establishment or maintenance of bipolar cell polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:2000100	regulation of establishment or maintenance of bipolar cell polarity regulating cell shape	IEP	Predict GO terms from Neighborhoods
BP	GO:2000247	positive regulation of establishment or maintenance of bipolar cell polarity regulating cell shape	IEP	Predict GO terms from Neighborhoods
BP	GO:2000769	regulation of establishment or maintenance of cell polarity regulating cell shape	IEP	Predict GO terms from Neighborhoods
BP	GO:2000771	positive regulation of establishment or maintenance of cell polarity regulating cell shape	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	317	350
IPR002885	Pentatricopeptide_repeat	667	700
IPR002885	Pentatricopeptide_repeat	422	455
IPR002885	Pentatricopeptide_repeat	351	384
IPR002885	Pentatricopeptide_repeat	492	526
IPR002885	Pentatricopeptide_repeat	459	491
IPR002885	Pentatricopeptide_repeat	634	657
IPR002885	Pentatricopeptide_repeat	702	734
IPR002885	Pentatricopeptide_repeat	386	420
IPR002885	Pentatricopeptide_repeat	562	593
IPR002885	Pentatricopeptide_repeat	283	314
IPR002885	Pentatricopeptide_repeat	562	592
IPR002885	Pentatricopeptide_repeat	284	311
IPR002885	Pentatricopeptide_repeat	317	345
IPR002885	Pentatricopeptide_repeat	489	538
IPR002885	Pentatricopeptide_repeat	419	468
IPR002885	Pentatricopeptide_repeat	664	713
IPR002885	Pentatricopeptide_repeat	348	396
IPR002885	Pentatricopeptide_repeat	625	657

External Links

No external refs found!

SOLTUB.AGRIA.G00000027472

Expression Profile

Co-expression Networks

Functional Annotation