SOLTUB.AGRIA.G00000028406


Description : RNA-binding KH domain-containing protein


Gene families : OG_02_0016160 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000028406
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_39


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA AHRD
MF GO:0003729 mRNA binding IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005634 nucleus IEA AHRD
CC GO:0005737 cytoplasm IEA AHRD
BP GO:0006355 regulation of DNA-templated transcription IEA AHRD
BP GO:0006396 RNA processing IEA AHRD
BP GO:0009299 mRNA transcription IEA AHRD
BP GO:0009911 positive regulation of flower development IEA AHRD
BP GO:0010608 post-transcriptional regulation of gene expression IEA AHRD
BP GO:0010628 positive regulation of gene expression IEA AHRD
BP GO:0030154 cell differentiation IEA AHRD
BP GO:0048467 gynoecium development IEA AHRD
BP GO:0048522 positive regulation of cellular process IEA AHRD
BP GO:0048523 negative regulation of cellular process IEA AHRD
BP GO:0048577 negative regulation of short-day photoperiodism, flowering IEA AHRD
BP GO:0048579 negative regulation of long-day photoperiodism, flowering IEA AHRD
Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEP Predict GO terms from Neighborhoods
CC GO:0005886 plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0010496 intercellular transport IEP Predict GO terms from Neighborhoods
BP GO:0010497 plasmodesmata-mediated intercellular transport IEP Predict GO terms from Neighborhoods
BP GO:0016032 viral process IEP Predict GO terms from Neighborhoods
CC GO:0030312 external encapsulating structure IEP Predict GO terms from Neighborhoods
BP GO:0044000 movement in host IEP Predict GO terms from Neighborhoods
BP GO:0044001 migration in host IEP Predict GO terms from Neighborhoods
BP GO:0046739 transport of virus in multicellular host IEP Predict GO terms from Neighborhoods
BP GO:0046794 transport of virus IEP Predict GO terms from Neighborhoods
BP GO:0051701 biological process involved in interaction with host IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR036612 KH_dom_type_1_sf 154 242
IPR036612 KH_dom_type_1_sf 335 410
IPR004088 KH_dom_type_1 342 404
IPR004088 KH_dom_type_1 162 225
IPR004088 KH_dom_type_1 71 121
IPR036612 KH_dom_type_1_sf 61 122
No external refs found!