SOLTUB.AGRIA.G00000028517

Description : Ap-4 complex subunit epsilon

Gene families : OG_02_0016174 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000028517
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_173

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005768	endosome	IEA	AHRD
CC	GO:0005794	Golgi apparatus	IEA	AHRD
CC	GO:0005798	Golgi-associated vesicle	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005905	clathrin-coated pit	IEA	AHRD
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	AHRD
BP	GO:0006892	post-Golgi vesicle-mediated transport	IEA	AHRD
BP	GO:0006897	endocytosis	None	Extended
BP	GO:0006898	receptor-mediated endocytosis	IEA	AHRD
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009506	plasmodesma	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	IEA	AHRD
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016482	cytosolic transport	IEA	AHRD
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030118	clathrin coat	None	Extended
CC	GO:0030119	AP-type membrane coat adaptor complex	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030124	AP-4 adaptor complex	IEA	AHRD
CC	GO:0030125	clathrin vesicle coat	IEA	AHRD
CC	GO:0030131	clathrin adaptor complex	IEA	AHRD
CC	GO:0030133	transport vesicle	IEA	AHRD
MF	GO:0030674	protein-macromolecule adaptor activity	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
MF	GO:0060090	molecular adaptor activity	None	Extended
BP	GO:0065007	biological regulation	IEA	AHRD
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0098590	plasma membrane region	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140312	cargo adaptor activity	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0000145	exocyst	IEP	Predict GO terms from Neighborhoods
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001666	response to hypoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:0002119	nematode larval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002164	larval development	IEP	Predict GO terms from Neighborhoods
MF	GO:0003825	alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003972	RNA ligase (ATP) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004683	calmodulin-dependent protein kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004709	MAP kinase kinase kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004805	trehalose-phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005324	long-chain fatty acid transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005769	early endosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005778	peroxisomal membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005802	trans-Golgi network	IEP	Predict GO terms from Neighborhoods
CC	GO:0005844	polysome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005946	alpha,alpha-trehalose-phosphate synthase complex (UDP-forming)	IEP	Predict GO terms from Neighborhoods
BP	GO:0005991	trehalose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005992	trehalose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006403	RNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006622	protein targeting to lysosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0006862	nucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006893	Golgi to plasma membrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006895	Golgi to endosome transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006896	Golgi to vacuole transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006909	phagocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006996	organelle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007041	lysosomal transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007127	meiosis I	IEP	Predict GO terms from Neighborhoods
BP	GO:0007589	body fluid secretion	IEP	Predict GO terms from Neighborhoods
MF	GO:0008281	sulfonylurea receptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008298	intracellular mRNA localization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008452	RNA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008559	ABC-type xenobiotic transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009686	gibberellin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009756	carbohydrate mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0009931	calcium-dependent protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010119	regulation of stomatal movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0010182	sugar mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0010290	chlorophyll catabolite transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0010857	calcium-dependent protein kinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0012506	vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0012510	trans-Golgi network transport vesicle membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0015215	nucleotide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015216	purine nucleotide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015431	ABC-type glutathione S-conjugate transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015732	prostaglandin transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015865	purine nucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015908	fatty acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015909	long-chain fatty acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015911	long-chain fatty acid import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0015914	phospholipid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016310	phosphorylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0016323	basolateral plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Predict GO terms from Neighborhoods
CC	GO:0017119	Golgi transport complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0018105	peptidyl-serine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018108	peptidyl-tyrosine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018209	peptidyl-serine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0018212	peptidyl-tyrosine modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0019203	carbohydrate phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0022402	cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022413	reproductive process in single-celled organism	IEP	Predict GO terms from Neighborhoods
BP	GO:0022600	digestive system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030007	cellular potassium ion homeostasis	IEP	Predict GO terms from Neighborhoods
CC	GO:0030126	COPI vesicle coat	IEP	Predict GO terms from Neighborhoods
CC	GO:0030132	clathrin coat of coated pit	IEP	Predict GO terms from Neighborhoods
BP	GO:0030154	cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030157	pancreatic juice secretion	IEP	Predict GO terms from Neighborhoods
CC	GO:0030426	growth cone	IEP	Predict GO terms from Neighborhoods
BP	GO:0030435	sporulation resulting in formation of a cellular spore	IEP	Predict GO terms from Neighborhoods
BP	GO:0030437	ascospore formation	IEP	Predict GO terms from Neighborhoods
CC	GO:0030658	transport vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030659	cytoplasmic vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030660	Golgi-associated vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030662	coated vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030665	clathrin-coated vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031090	organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031466	Cul5-RING ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0031624	ubiquitin conjugating enzyme binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031903	microbody membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031984	organelle subcompartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0032941	secretion by tissue	IEP	Predict GO terms from Neighborhoods
BP	GO:0033700	phospholipid efflux	IEP	Predict GO terms from Neighborhoods
MF	GO:0034040	ATPase-coupled lipid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0034634	glutathione transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034635	glutathione transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0034775	glutathione transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035443	tripeptide transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035672	oligopeptide transmembrane transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0035861	site of double-strand break	IEP	Predict GO terms from Neighborhoods
BP	GO:0036289	peptidyl-serine autophosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0036293	response to decreased oxygen levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0042245	RNA repair	IEP	Predict GO terms from Neighborhoods
MF	GO:0042937	tripeptide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042939	tripeptide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043934	sporulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043935	sexual sporulation resulting in formation of a cellular spore	IEP	Predict GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0044390	ubiquitin-like protein conjugating enzyme binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0044539	long-chain fatty acid import into cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0046351	disaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046618	xenobiotic export from cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0046903	secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0048544	recognition of pollen	IEP	Predict GO terms from Neighborhoods
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050727	regulation of inflammatory response	IEP	Predict GO terms from Neighborhoods
BP	GO:0050729	positive regulation of inflammatory response	IEP	Predict GO terms from Neighborhoods
BP	GO:0050878	regulation of body fluid levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0051668	localization within membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0060321	acceptance of pollen	IEP	Predict GO terms from Neighborhoods
BP	GO:0060326	cell chemotaxis	IEP	Predict GO terms from Neighborhoods
BP	GO:0061462	protein localization to lysosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0061512	protein localization to cilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0061982	meiosis I cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070413	trehalose metabolism in response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0070482	response to oxygen levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0070534	protein K63-linked ubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0070936	protein K48-linked ubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0071425	hematopoietic stem cell proliferation	IEP	Predict GO terms from Neighborhoods
MF	GO:0071714	icosanoid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0071715	icosanoid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0071716	leukotriene transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072089	stem cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0072337	modified amino acid transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0072349	modified amino acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090160	Golgi to lysosome transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0090522	vesicle tethering involved in exocytosis	IEP	Predict GO terms from Neighborhoods
CC	GO:0090734	site of DNA damage	IEP	Predict GO terms from Neighborhoods
BP	GO:0097499	protein localization to non-motile cilium	IEP	Predict GO terms from Neighborhoods
CC	GO:0098588	bounding membrane of organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0098791	Golgi apparatus subcompartment	IEP	Predict GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0099022	vesicle tethering	IEP	Predict GO terms from Neighborhoods
CC	GO:0099023	vesicle tethering complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0099041	vesicle tethering to Golgi	IEP	Predict GO terms from Neighborhoods
BP	GO:0099612	protein localization to axon	IEP	Predict GO terms from Neighborhoods
MF	GO:0102986	trehalose synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0140029	exocytic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0140354	lipid import into cell	IEP	Predict GO terms from Neighborhoods
BP	GO:1901016	regulation of potassium ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901215	negative regulation of neuron death	IEP	Predict GO terms from Neighborhoods
BP	GO:1901379	regulation of potassium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1901419	regulation of response to alcohol	IEP	Predict GO terms from Neighborhoods
BP	GO:1901527	abscisic acid-activated signaling pathway involved in stomatal movement	IEP	Predict GO terms from Neighborhoods
BP	GO:1901979	regulation of inward rectifier potassium channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902001	fatty acid transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1902463	protein localization to cell leading edge	IEP	Predict GO terms from Neighborhoods
BP	GO:1903046	meiotic cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903361	protein localization to basolateral plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1904645	response to amyloid-beta	IEP	Predict GO terms from Neighborhoods
BP	GO:1904646	cellular response to amyloid-beta	IEP	Predict GO terms from Neighborhoods
BP	GO:1905957	regulation of cellular response to alcohol	IEP	Predict GO terms from Neighborhoods
BP	GO:1990961	xenobiotic detoxification by transmembrane export across the plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:2000035	regulation of stem cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:2001257	regulation of cation channel activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002553	Clathrin/coatomer_adapt-like_N	49	610
IPR016024	ARM-type_fold	27	622

External Links

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SOLTUB.AGRIA.G00000028517

Expression Profile

Co-expression Networks

Functional Annotation