SOLTUB.AGRIA.G00000028792

Description : Pentatricopeptide repeat-containing protein, putative

Gene families : OG_02_0020611 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000028792
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_115

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0000963	mitochondrial RNA processing	None	Extended
BP	GO:0000966	RNA 5'-end processing	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004016	adenylate cyclase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006412	translation	None	Extended
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009536	plastid	IEA	AHRD
MF	GO:0009975	cyclase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010467	gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016849	phosphorus-oxygen lyase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032543	mitochondrial translation	IEA	AHRD
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080156	mitochondrial mRNA modification	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090615	mitochondrial mRNA processing	None	Extended
BP	GO:0090617	mitochondrial mRNA 5'-end processing	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140053	mitochondrial gene expression	None	Extended
BP	GO:1900864	mitochondrial RNA modification	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000349	generation of catalytic spliceosome for first transesterification step	IEP	Predict GO terms from Neighborhoods
BP	GO:0000350	generation of catalytic spliceosome for second transesterification step	IEP	Predict GO terms from Neighborhoods
MF	GO:0000386	second spliceosomal transesterification activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0000390	spliceosomal complex disassembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0003724	RNA helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004364	glutathione transferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005684	U2-type spliceosomal complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006749	glutathione metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007281	germ cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007530	sex determination	IEP	Predict GO terms from Neighborhoods
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0010043	response to zinc ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010171	body morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010172	embryonic body morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0018992	germ-line sex determination	IEP	Predict GO terms from Neighborhoods
BP	GO:0031053	primary miRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031334	positive regulation of protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0032984	protein-containing complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0032988	ribonucleoprotein complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0033120	positive regulation of RNA splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0035196	miRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0040021	hermaphrodite germ-line sex determination	IEP	Predict GO terms from Neighborhoods
BP	GO:0040022	feminization of hermaphroditic germ-line	IEP	Predict GO terms from Neighborhoods
BP	GO:0043254	regulation of protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043484	regulation of RNA splicing	IEP	Predict GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070918	small regulatory ncRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0071005	U2-type precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071007	U2-type catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071011	precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071013	catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071014	post-mRNA release spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071020	post-spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071021	U2-type post-spliceosomal complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Predict GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	223	247
IPR002885	Pentatricopeptide_repeat	504	538
IPR002885	Pentatricopeptide_repeat	223	258
IPR002885	Pentatricopeptide_repeat	331	363
IPR002885	Pentatricopeptide_repeat	192	217
IPR002885	Pentatricopeptide_repeat	364	397
IPR002885	Pentatricopeptide_repeat	259	293
IPR002885	Pentatricopeptide_repeat	399	433
IPR002885	Pentatricopeptide_repeat	434	467
IPR002885	Pentatricopeptide_repeat	539	571
IPR002885	Pentatricopeptide_repeat	294	327
IPR002885	Pentatricopeptide_repeat	469	503
IPR002885	Pentatricopeptide_repeat	327	375
IPR002885	Pentatricopeptide_repeat	397	445
IPR002885	Pentatricopeptide_repeat	256	305
IPR002885	Pentatricopeptide_repeat	501	550
IPR002885	Pentatricopeptide_repeat	185	216
IPR002885	Pentatricopeptide_repeat	462	493
IPR011990	TPR-like_helical_dom_sf	174	458

External Links

No external refs found!

SOLTUB.AGRIA.G00000028792

Expression Profile

Co-expression Networks

Functional Annotation