SOLTUB.AGRIA.G00000029022

Description : Sphingomyelin phosphodiesterase 4

Gene families : OG_02_0010196 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000029022
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_138

Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004620	phospholipase activity	None	Extended
MF	GO:0004767	sphingomyelin phosphodiesterase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005635	nuclear envelope	IEA	AHRD
CC	GO:0005783	endoplasmic reticulum	IEA	AHRD
CC	GO:0005789	endoplasmic reticulum membrane	IEA	AHRD
CC	GO:0005794	Golgi apparatus	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006643	membrane lipid metabolic process	None	Extended
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006665	sphingolipid metabolic process	None	Extended
BP	GO:0006672	ceramide metabolic process	None	Extended
BP	GO:0006684	sphingomyelin metabolic process	None	Extended
BP	GO:0006685	sphingomyelin catabolic process	IEA	AHRD
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008081	phosphoric diester hydrolase activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009395	phospholipid catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
CC	GO:0016020	membrane	IEA	AHRD
CC	GO:0016021	integral component of membrane	IEA	AHRD
BP	GO:0016042	lipid catabolic process	None	Extended
MF	GO:0016298	lipase activity	None	Extended
MF	GO:0016787	hydrolase activity	IEA	AHRD
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0030148	sphingolipid biosynthetic process	None	Extended
BP	GO:0030149	sphingolipid catabolic process	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0034097	response to cytokine	None	Extended
BP	GO:0034612	response to tumor necrosis factor	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0042383	sarcolemma	IEA	AHRD
MF	GO:0042578	phosphoric ester hydrolase activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044242	cellular lipid catabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046434	organophosphate catabolic process	None	Extended
BP	GO:0046466	membrane lipid catabolic process	None	Extended
BP	GO:0046467	membrane lipid biosynthetic process	None	Extended
BP	GO:0046513	ceramide biosynthetic process	IEA	AHRD
MF	GO:0046872	metal ion binding	IEA	AHRD
MF	GO:0050290	sphingomyelin phosphodiesterase D activity	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071310	cellular response to organic substance	None	Extended
BP	GO:0071345	cellular response to cytokine stimulus	None	Extended
BP	GO:0071356	cellular response to tumor necrosis factor	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000054	ribosomal subunit export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0000056	ribosomal small subunit export from nucleus	IEP	Predict GO terms from Neighborhoods
CC	GO:0000145	exocyst	IEP	Predict GO terms from Neighborhoods
BP	GO:0000338	protein deneddylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005829	cytosol	IEP	Predict GO terms from Neighborhoods
BP	GO:0006403	RNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006810	transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006886	intracellular protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006892	post-Golgi vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006893	Golgi to plasma membrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007030	Golgi organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007589	body fluid secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007602	phototransduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0008037	cell recognition	IEP	Predict GO terms from Neighborhoods
BP	GO:0008104	protein localization	IEP	Predict GO terms from Neighborhoods
CC	GO:0008180	COP9 signalosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008298	intracellular mRNA localization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008460	dTDP-glucose 4,6-dehydratase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008653	lipopolysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008830	dTDP-4-dehydrorhamnose 3,5-epimerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008831	dTDP-4-dehydrorhamnose reductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009103	lipopolysaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009226	nucleotide-sugar biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009581	detection of external stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009582	detection of abiotic stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009583	detection of light stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009585	red, far-red light phototransduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0010192	mucilage biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010253	UDP-rhamnose biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0010280	UDP-L-rhamnose synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010315	auxin export across the plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0010387	COP9 signalosome assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0010489	UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0010490	UDP-4-keto-rhamnose-4-keto-reductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015031	protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0016192	vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0016836	hydro-lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016854	racemase and epimerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	Predict GO terms from Neighborhoods
CC	GO:0017119	Golgi transport complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0019305	dTDP-rhamnose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022600	digestive system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0030117	membrane coat	IEP	Predict GO terms from Neighborhoods
CC	GO:0030120	vesicle coat	IEP	Predict GO terms from Neighborhoods
CC	GO:0030126	COPI vesicle coat	IEP	Predict GO terms from Neighborhoods
BP	GO:0030157	pancreatic juice secretion	IEP	Predict GO terms from Neighborhoods
CC	GO:0030426	growth cone	IEP	Predict GO terms from Neighborhoods
CC	GO:0030684	preribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0030688	preribosome, small subunit precursor	IEP	Predict GO terms from Neighborhoods
BP	GO:0030718	germ-line stem cell population maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0031503	protein-containing complex localization	IEP	Predict GO terms from Neighborhoods
MF	GO:0032182	ubiquitin-like protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032941	secretion by tissue	IEP	Predict GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0033036	macromolecule localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0033478	UDP-rhamnose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033750	ribosome localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0036099	female germ-line stem cell population maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0042802	identical protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0042803	protein homodimerization activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0043022	ribosome binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043130	ubiquitin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0045184	establishment of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045226	extracellular polysaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046379	extracellular polysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046383	dTDP-rhamnose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0048138	germ-line cyst encapsulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048140	male germ-line cyst encapsulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048193	Golgi vesicle transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0048544	recognition of pollen	IEP	Predict GO terms from Neighborhoods
MF	GO:0050377	UDP-glucose 4,6-dehydratase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050878	regulation of body fluid levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0051168	nuclear export	IEP	Predict GO terms from Neighborhoods
BP	GO:0051179	localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051234	establishment of localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051552	flavone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051553	flavone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051554	flavonol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051555	flavonol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051641	cellular localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0060178	regulation of exocyst localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0060321	acceptance of pollen	IEP	Predict GO terms from Neighborhoods
BP	GO:0061640	cytoskeleton-dependent cytokinesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0070122	obsolete isopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070646	protein modification by small protein removal	IEP	Predict GO terms from Neighborhoods
BP	GO:0070727	cellular macromolecule localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071702	organic substance transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0071705	nitrogen compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090522	vesicle tethering involved in exocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0098876	vesicle-mediated transport to the plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0099022	vesicle tethering	IEP	Predict GO terms from Neighborhoods
CC	GO:0099023	vesicle tethering complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0099612	protein localization to axon	IEP	Predict GO terms from Neighborhoods
BP	GO:0140029	exocytic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902463	protein localization to cell leading edge	IEP	Predict GO terms from Neighborhoods
BP	GO:1903509	liposaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1990641	response to iron ion starvation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR024129	Sphingomy_SMPD4	102	209

External Links

No external refs found!

SOLTUB.AGRIA.G00000029022

Expression Profile

Co-expression Networks

Functional Annotation