SOLTUB.AGRIA.G00000029718

Description : Transcription factor GRAS

Gene families : OG_02_0016373 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000029718
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_124

Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	IEA	AHRD
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007602	phototransduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009410	response to xenobiotic stimulus	IEA	AHRD
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009585	red, far-red light phototransduction	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009640	photomorphogenesis	IEA	AHRD
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	IEA	AHRD
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031667	response to nutrient levels	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEA	AHRD
BP	GO:0045893	positive regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080183	response to photooxidative stress	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1990110	callus formation	IEA	AHRD
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0000196	cell wall integrity MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0000919	cell plate assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0000935	division septum	IEP	Predict GO terms from Neighborhoods
BP	GO:0002221	pattern recognition receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0003006	developmental process involved in reproduction	IEP	Predict GO terms from Neighborhoods
MF	GO:0004709	MAP kinase kinase kinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005938	cell cortex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006914	autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0008285	negative regulation of cell population proliferation	IEP	Predict GO terms from Neighborhoods
CC	GO:0009524	phragmoplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0009612	response to mechanical stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009631	cold acclimation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009756	carbohydrate mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0009835	fruit ripening	IEP	Predict GO terms from Neighborhoods
BP	GO:0009836	fruit ripening, climacteric	IEP	Predict GO terms from Neighborhoods
BP	GO:0009838	abscission	IEP	Predict GO terms from Neighborhoods
BP	GO:0009900	dehiscence	IEP	Predict GO terms from Neighborhoods
BP	GO:0009911	positive regulation of flower development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010047	fruit dehiscence	IEP	Predict GO terms from Neighborhoods
BP	GO:0010098	suspensor development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010103	stomatal complex morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010182	sugar mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010227	floral organ abscission	IEP	Predict GO terms from Neighborhoods
BP	GO:0010229	inflorescence development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010449	root meristem growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0010514	induction of conjugation with cellular fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010594	regulation of endothelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010595	positive regulation of endothelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010632	regulation of epithelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010634	positive regulation of epithelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010959	regulation of metal ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016556	mRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0030242	autophagy of peroxisome	IEP	Predict GO terms from Neighborhoods
BP	GO:0030334	regulation of cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0030335	positive regulation of cell migration	IEP	Predict GO terms from Neighborhoods
CC	GO:0030428	cell septum	IEP	Predict GO terms from Neighborhoods
BP	GO:0030587	sorocarp development	IEP	Predict GO terms from Neighborhoods
BP	GO:0030865	cortical cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031098	stress-activated protein kinase signaling cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0031122	cytoplasmic microtubule organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031137	regulation of conjugation with cellular fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0031139	positive regulation of conjugation with cellular fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032872	regulation of stress-activated MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0032874	positive regulation of stress-activated MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0032879	regulation of localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0034764	positive regulation of transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0034767	positive regulation of ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035266	meristem growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0040017	positive regulation of locomotion	IEP	Predict GO terms from Neighborhoods
BP	GO:0042127	regulation of cell population proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043122	regulation of I-kappaB kinase/NF-kappaB signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0043200	response to amino acid	IEP	Predict GO terms from Neighborhoods
BP	GO:0043266	regulation of potassium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043268	positive regulation of potassium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043270	positive regulation of ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043408	regulation of MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0043410	positive regulation of MAPK cascade	IEP	Predict GO terms from Neighborhoods
MF	GO:0043531	ADP binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043535	regulation of blood vessel endothelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0043536	positive regulation of blood vessel endothelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0043622	cortical microtubule organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0046982	protein heterodimerization activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048316	seed development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048481	plant ovule development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048608	reproductive structure development	IEP	Predict GO terms from Neighborhoods
CC	GO:0051286	cell tip	IEP	Predict GO terms from Neighborhoods
BP	GO:0051403	stress-activated MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0051607	defense response to virus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051703	biological process involved in intraspecies interaction between organisms	IEP	Predict GO terms from Neighborhoods
CC	GO:0060187	cell pole	IEP	Predict GO terms from Neighborhoods
BP	GO:0060237	regulation of fungal-type cell wall organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0061919	process utilizing autophagic mechanism	IEP	Predict GO terms from Neighborhoods
BP	GO:0070302	regulation of stress-activated protein kinase signaling cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0070304	positive regulation of stress-activated protein kinase signaling cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0071260	cellular response to mechanical stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071507	pheromone response MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0071863	regulation of cell proliferation in bone marrow	IEP	Predict GO terms from Neighborhoods
BP	GO:0071864	positive regulation of cell proliferation in bone marrow	IEP	Predict GO terms from Neighborhoods
BP	GO:0080156	mitochondrial mRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0090049	regulation of cell migration involved in sprouting angiogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090050	positive regulation of cell migration involved in sprouting angiogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090626	plant epidermis morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0099120	socially cooperative development	IEP	Predict GO terms from Neighborhoods
BP	GO:0140546	defense response to symbiont	IEP	Predict GO terms from Neighborhoods
BP	GO:1900150	regulation of defense response to fungus	IEP	Predict GO terms from Neighborhoods
BP	GO:1900744	regulation of p38MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:1900745	positive regulation of p38MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:1900864	mitochondrial RNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:1901379	regulation of potassium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1901381	positive regulation of potassium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1902065	response to L-glutamate	IEP	Predict GO terms from Neighborhoods
BP	GO:1903286	regulation of potassium ion import	IEP	Predict GO terms from Neighborhoods
BP	GO:1903288	positive regulation of potassium ion import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1903338	regulation of cell wall organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1904062	regulation of cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1904064	positive regulation of cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:2000071	regulation of defense response by callose deposition	IEP	Predict GO terms from Neighborhoods
BP	GO:2000145	regulation of cell motility	IEP	Predict GO terms from Neighborhoods
BP	GO:2000147	positive regulation of cell motility	IEP	Predict GO terms from Neighborhoods
BP	GO:2000772	regulation of cellular senescence	IEP	Predict GO terms from Neighborhoods
BP	GO:2000773	negative regulation of cellular senescence	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR005202	TF_GRAS	387	759

External Links

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SOLTUB.AGRIA.G00000029718

Expression Profile

Co-expression Networks

Functional Annotation