SOLTUB.AGRIA.G00000029947

Description : Geranylgeranyl pyrophosphate synthase family protein

Gene families : OG_02_0010341 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000029947
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_216

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004161	dimethylallyltranstransferase activity	IEA	AHRD
MF	GO:0004311	farnesyltranstransferase activity	IEA	AHRD
MF	GO:0004337	geranyltranstransferase activity	IEA	AHRD
MF	GO:0004659	prenyltransferase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
CC	GO:0005783	endoplasmic reticulum	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0008654	phospholipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
CC	GO:0009513	etioplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009625	response to insect	IEA	AHRD
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009751	response to salicylic acid	IEA	AHRD
BP	GO:0009753	response to jasmonic acid	IEA	AHRD
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
CC	GO:0010287	plastoglobule	IEA	AHRD
BP	GO:0014070	response to organic cyclic compound	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016114	terpenoid biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0042214	terpene metabolic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0042651	thylakoid membrane	IEA	AHRD
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043692	monoterpene metabolic process	None	Extended
BP	GO:0043693	monoterpene biosynthetic process	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
MF	GO:0044687	geranylfarnesyl diphosphate synthase activity	IEA	AHRD
BP	GO:0045337	farnesyl diphosphate biosynthetic process	IEA	AHRD
BP	GO:0045338	farnesyl diphosphate metabolic process	None	Extended
BP	GO:0046246	terpene biosynthetic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0070542	response to fatty acid	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080027	response to herbivore	IEA	AHRD
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120251	hydrocarbon biosynthetic process	None	Extended
BP	GO:0120252	hydrocarbon metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0002953	5'-deoxynucleotidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003697	single-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004746	riboflavin synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006766	vitamin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006771	riboflavin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009110	vitamin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009125	nucleoside monophosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009159	deoxyribonucleoside monophosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009162	deoxyribonucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009231	riboflavin biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009509	chromoplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009526	plastid envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0009529	plastid intermembrane space	IEP	Predict GO terms from Neighborhoods
CC	GO:0009532	plastid stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009570	chloroplast stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009941	chloroplast envelope	IEP	Predict GO terms from Neighborhoods
BP	GO:0016108	tetraterpenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016109	tetraterpenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016116	carotenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016117	carotenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0031967	organelle envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0031970	organelle envelope lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0031972	chloroplast intermembrane space	IEP	Predict GO terms from Neighborhoods
CC	GO:0031975	envelope	IEP	Predict GO terms from Neighborhoods
BP	GO:0032544	plastid translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033383	geranyl diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033384	geranyl diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033385	geranylgeranyl diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033386	geranylgeranyl diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043424	protein histidine kinase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070206	protein trimerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0070207	protein homotrimerization	IEP	Predict GO terms from Neighborhoods
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:1902444	riboflavin binding	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000092	Polyprenyl_synt	69	273
IPR008949	Isoprenoid_synthase_dom_sf	44	306

External Links

No external refs found!

SOLTUB.AGRIA.G00000029947

Expression Profile

Co-expression Networks

Functional Annotation