| CC | GO:0000151 | ubiquitin ligase complex | None | Extended |
| CC | GO:0000152 | nuclear ubiquitin ligase complex | None | Extended |
| BP | GO:0000209 | protein polyubiquitination | None | Extended |
| CC | GO:0000242 | pericentriolar material | IEA | AHRD |
| CC | GO:0000922 | spindle pole | IEA | AHRD |
| BP | GO:0003006 | developmental process involved in reproduction | None | Extended |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003676 | nucleic acid binding | None | Extended |
| MF | GO:0003712 | transcription coregulator activity | IEA | AHRD |
| MF | GO:0003723 | RNA binding | IEA | AHRD |
| MF | GO:0003824 | catalytic activity | None | Extended |
| MF | GO:0003950 | NAD+ ADP-ribosyltransferase activity | IEA | AHRD |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEA | AHRD |
| MF | GO:0005488 | binding | None | Extended |
| MF | GO:0005515 | protein binding | None | Extended |
| CC | GO:0005575 | cellular_component | None | Extended |
| CC | GO:0005635 | nuclear envelope | IEA | AHRD |
| CC | GO:0005694 | chromosome | IEA | AHRD |
| CC | GO:0005794 | Golgi apparatus | IEA | AHRD |
| BP | GO:0006355 | regulation of DNA-templated transcription | None | Extended |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEA | AHRD |
| BP | GO:0006468 | protein phosphorylation | IEA | AHRD |
| BP | GO:0006471 | protein ADP-ribosylation | None | Extended |
| BP | GO:0006793 | phosphorus metabolic process | None | Extended |
| BP | GO:0006796 | phosphate-containing compound metabolic process | None | Extended |
| BP | GO:0006807 | nitrogen compound metabolic process | None | Extended |
| BP | GO:0006950 | response to stress | None | Extended |
| BP | GO:0006996 | organelle organization | None | Extended |
| BP | GO:0007010 | cytoskeleton organization | None | Extended |
| BP | GO:0007276 | gamete generation | None | Extended |
| BP | GO:0007283 | spermatogenesis | IEA | AHRD |
| BP | GO:0007517 | muscle organ development | IEA | AHRD |
| BP | GO:0008104 | protein localization | None | Extended |
| BP | GO:0008150 | biological_process | None | Extended |
| BP | GO:0008152 | metabolic process | None | Extended |
| BP | GO:0009605 | response to external stimulus | IEA | AHRD |
| BP | GO:0009628 | response to abiotic stimulus | IEA | AHRD |
| BP | GO:0009653 | anatomical structure morphogenesis | IEA | AHRD |
| BP | GO:0009888 | tissue development | None | Extended |
| BP | GO:0009889 | regulation of biosynthetic process | None | Extended |
| BP | GO:0009890 | negative regulation of biosynthetic process | None | Extended |
| BP | GO:0009891 | positive regulation of biosynthetic process | None | Extended |
| BP | GO:0009892 | negative regulation of metabolic process | None | Extended |
| BP | GO:0009893 | positive regulation of metabolic process | None | Extended |
| BP | GO:0009894 | regulation of catabolic process | None | Extended |
| BP | GO:0009896 | positive regulation of catabolic process | None | Extended |
| BP | GO:0009966 | regulation of signal transduction | None | Extended |
| BP | GO:0009967 | positive regulation of signal transduction | None | Extended |
| BP | GO:0009987 | cellular process | None | Extended |
| BP | GO:0010033 | response to organic substance | None | Extended |
| BP | GO:0010468 | regulation of gene expression | None | Extended |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | None | Extended |
| BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | None | Extended |
| BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | None | Extended |
| BP | GO:0010604 | positive regulation of macromolecule metabolic process | None | Extended |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | None | Extended |
| BP | GO:0010638 | positive regulation of organelle organization | None | Extended |
| BP | GO:0010639 | negative regulation of organelle organization | None | Extended |
| BP | GO:0010646 | regulation of cell communication | None | Extended |
| BP | GO:0010647 | positive regulation of cell communication | None | Extended |
| BP | GO:0010941 | regulation of cell death | None | Extended |
| BP | GO:0010942 | positive regulation of cell death | None | Extended |
| BP | GO:0014706 | striated muscle tissue development | IEA | AHRD |
| CC | GO:0016020 | membrane | None | Extended |
| BP | GO:0016043 | cellular component organization | None | Extended |
| BP | GO:0016310 | phosphorylation | None | Extended |
| BP | GO:0016567 | protein ubiquitination | None | Extended |
| CC | GO:0016604 | nuclear body | None | Extended |
| CC | GO:0016607 | nuclear speck | IEA | AHRD |
| MF | GO:0016740 | transferase activity | None | Extended |
| MF | GO:0016757 | glycosyltransferase activity | None | Extended |
| MF | GO:0016763 | pentosyltransferase activity | None | Extended |
| BP | GO:0018193 | peptidyl-amino acid modification | IEA | AHRD |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | None | Extended |
| BP | GO:0019220 | regulation of phosphate metabolic process | None | Extended |
| BP | GO:0019222 | regulation of metabolic process | None | Extended |
| BP | GO:0019538 | protein metabolic process | None | Extended |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | None | Extended |
| MF | GO:0019899 | enzyme binding | IEA | AHRD |
| BP | GO:0022414 | reproductive process | None | Extended |
| BP | GO:0022607 | cellular component assembly | None | Extended |
| BP | GO:0023051 | regulation of signaling | None | Extended |
| BP | GO:0023056 | positive regulation of signaling | None | Extended |
| CC | GO:0030016 | myofibril | IEA | AHRD |
| BP | GO:0030029 | actin filament-based process | None | Extended |
| BP | GO:0030036 | actin cytoskeleton organization | IEA | AHRD |
| BP | GO:0030111 | regulation of Wnt signaling pathway | None | Extended |
| BP | GO:0030154 | cell differentiation | IEA | AHRD |
| BP | GO:0030162 | regulation of proteolysis | None | Extended |
| BP | GO:0030177 | positive regulation of Wnt signaling pathway | None | Extended |
| CC | GO:0031090 | organelle membrane | IEA | AHRD |
| BP | GO:0031323 | regulation of cellular metabolic process | None | Extended |
| BP | GO:0031324 | negative regulation of cellular metabolic process | None | Extended |
| BP | GO:0031325 | positive regulation of cellular metabolic process | None | Extended |
| BP | GO:0031326 | regulation of cellular biosynthetic process | None | Extended |
| BP | GO:0031327 | negative regulation of cellular biosynthetic process | None | Extended |
| BP | GO:0031328 | positive regulation of cellular biosynthetic process | None | Extended |
| BP | GO:0031329 | regulation of cellular catabolic process | None | Extended |
| BP | GO:0031331 | positive regulation of cellular catabolic process | None | Extended |
| CC | GO:0031436 | BRCA1-BARD1 complex | IEA | AHRD |
| CC | GO:0031967 | organelle envelope | None | Extended |
| CC | GO:0031975 | envelope | None | Extended |
| BP | GO:0032204 | regulation of telomere maintenance | None | Extended |
| BP | GO:0032205 | negative regulation of telomere maintenance | None | Extended |
| BP | GO:0032206 | positive regulation of telomere maintenance | None | Extended |
| BP | GO:0032210 | regulation of telomere maintenance via telomerase | IEA | AHRD |
| BP | GO:0032386 | regulation of intracellular transport | None | Extended |
| BP | GO:0032387 | negative regulation of intracellular transport | None | Extended |
| BP | GO:0032434 | regulation of proteasomal ubiquitin-dependent protein catabolic process | None | Extended |
| BP | GO:0032436 | positive regulation of proteasomal ubiquitin-dependent protein catabolic process | IEA | AHRD |
| BP | GO:0032446 | protein modification by small protein conjugation | None | Extended |
| BP | GO:0032502 | developmental process | None | Extended |
| BP | GO:0032507 | maintenance of protein location in cell | None | Extended |
| BP | GO:0032879 | regulation of localization | None | Extended |
| BP | GO:0032880 | regulation of protein localization | None | Extended |
| CC | GO:0032991 | protein-containing complex | None | Extended |
| BP | GO:0033036 | macromolecule localization | None | Extended |
| BP | GO:0033043 | regulation of organelle organization | None | Extended |
| BP | GO:0033044 | regulation of chromosome organization | None | Extended |
| BP | GO:0033157 | regulation of intracellular protein transport | None | Extended |
| BP | GO:0033365 | protein localization to organelle | None | Extended |
| BP | GO:0033554 | cellular response to stress | IEA | AHRD |
| BP | GO:0034502 | protein localization to chromosome | None | Extended |
| CC | GO:0035770 | ribonucleoprotein granule | None | Extended |
| BP | GO:0036211 | protein modification process | None | Extended |
| CC | GO:0036464 | cytoplasmic ribonucleoprotein granule | IEA | AHRD |
| BP | GO:0042176 | regulation of protein catabolic process | None | Extended |
| BP | GO:0042221 | response to chemical | None | Extended |
| BP | GO:0042325 | regulation of phosphorylation | IEA | AHRD |
| MF | GO:0042802 | identical protein binding | None | Extended |
| MF | GO:0042803 | protein homodimerization activity | IEA | AHRD |
| BP | GO:0042981 | regulation of apoptotic process | None | Extended |
| BP | GO:0043065 | positive regulation of apoptotic process | IEA | AHRD |
| BP | GO:0043066 | negative regulation of apoptotic process | IEA | AHRD |
| BP | GO:0043067 | regulation of programmed cell death | None | Extended |
| BP | GO:0043068 | positive regulation of programmed cell death | None | Extended |
| BP | GO:0043069 | negative regulation of programmed cell death | None | Extended |
| MF | GO:0043167 | ion binding | None | Extended |
| MF | GO:0043169 | cation binding | None | Extended |
| BP | GO:0043170 | macromolecule metabolic process | None | Extended |
| CC | GO:0043226 | organelle | None | Extended |
| CC | GO:0043227 | membrane-bounded organelle | None | Extended |
| CC | GO:0043228 | non-membrane-bounded organelle | None | Extended |
| CC | GO:0043229 | intracellular organelle | None | Extended |
| CC | GO:0043231 | intracellular membrane-bounded organelle | None | Extended |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | None | Extended |
| CC | GO:0043292 | contractile fiber | None | Extended |
| BP | GO:0043412 | macromolecule modification | None | Extended |
| BP | GO:0044237 | cellular metabolic process | None | Extended |
| BP | GO:0044238 | primary metabolic process | None | Extended |
| BP | GO:0045185 | maintenance of protein location | None | Extended |
| BP | GO:0045732 | positive regulation of protein catabolic process | None | Extended |
| BP | GO:0045862 | positive regulation of proteolysis | None | Extended |
| BP | GO:0045893 | positive regulation of DNA-templated transcription | IEA | AHRD |
| BP | GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | None | Extended |
| BP | GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | None | Extended |
| BP | GO:0046822 | regulation of nucleocytoplasmic transport | None | Extended |
| BP | GO:0046823 | negative regulation of nucleocytoplasmic transport | None | Extended |
| BP | GO:0046825 | regulation of protein export from nucleus | None | Extended |
| BP | GO:0046826 | negative regulation of protein export from nucleus | IEA | AHRD |
| MF | GO:0046872 | metal ion binding | IEA | AHRD |
| MF | GO:0046982 | protein heterodimerization activity | IEA | AHRD |
| MF | GO:0046983 | protein dimerization activity | None | Extended |
| BP | GO:0048232 | male gamete generation | None | Extended |
| CC | GO:0048471 | perinuclear region of cytoplasm | IEA | AHRD |
| BP | GO:0048513 | animal organ development | None | Extended |
| BP | GO:0048518 | positive regulation of biological process | None | Extended |
| BP | GO:0048519 | negative regulation of biological process | None | Extended |
| BP | GO:0048522 | positive regulation of cellular process | None | Extended |
| BP | GO:0048523 | negative regulation of cellular process | None | Extended |
| BP | GO:0048583 | regulation of response to stimulus | None | Extended |
| BP | GO:0048584 | positive regulation of response to stimulus | None | Extended |
| BP | GO:0048609 | multicellular organismal reproductive process | None | Extended |
| BP | GO:0048856 | anatomical structure development | None | Extended |
| BP | GO:0048869 | cellular developmental process | None | Extended |
| BP | GO:0050789 | regulation of biological process | None | Extended |
| BP | GO:0050790 | regulation of catalytic activity | IEA | AHRD |
| BP | GO:0050793 | regulation of developmental process | IEA | AHRD |
| BP | GO:0050794 | regulation of cellular process | None | Extended |
| BP | GO:0050896 | response to stimulus | None | Extended |
| BP | GO:0051049 | regulation of transport | None | Extended |
| BP | GO:0051051 | negative regulation of transport | None | Extended |
| BP | GO:0051052 | regulation of DNA metabolic process | None | Extended |
| BP | GO:0051053 | negative regulation of DNA metabolic process | None | Extended |
| BP | GO:0051054 | positive regulation of DNA metabolic process | None | Extended |
| BP | GO:0051128 | regulation of cellular component organization | None | Extended |
| BP | GO:0051129 | negative regulation of cellular component organization | None | Extended |
| BP | GO:0051130 | positive regulation of cellular component organization | None | Extended |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | None | Extended |
| BP | GO:0051172 | negative regulation of nitrogen compound metabolic process | None | Extended |
| BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | None | Extended |
| BP | GO:0051174 | regulation of phosphorus metabolic process | None | Extended |
| BP | GO:0051179 | localization | None | Extended |
| BP | GO:0051223 | regulation of protein transport | None | Extended |
| BP | GO:0051224 | negative regulation of protein transport | None | Extended |
| BP | GO:0051235 | maintenance of location | None | Extended |
| BP | GO:0051239 | regulation of multicellular organismal process | IEA | AHRD |
| BP | GO:0051246 | regulation of protein metabolic process | None | Extended |
| BP | GO:0051247 | positive regulation of protein metabolic process | None | Extended |
| BP | GO:0051252 | regulation of RNA metabolic process | None | Extended |
| BP | GO:0051253 | negative regulation of RNA metabolic process | IEA | AHRD |
| BP | GO:0051254 | positive regulation of RNA metabolic process | None | Extended |
| BP | GO:0051457 | maintenance of protein location in nucleus | None | Extended |
| BP | GO:0051641 | cellular localization | None | Extended |
| BP | GO:0051651 | maintenance of location in cell | None | Extended |
| BP | GO:0051716 | cellular response to stimulus | None | Extended |
| BP | GO:0051726 | regulation of cell cycle | IEA | AHRD |
| BP | GO:0060255 | regulation of macromolecule metabolic process | None | Extended |
| BP | GO:0060341 | regulation of cellular localization | None | Extended |
| BP | GO:0060537 | muscle tissue development | None | Extended |
| BP | GO:0060548 | negative regulation of cell death | None | Extended |
| BP | GO:0060828 | regulation of canonical Wnt signaling pathway | None | Extended |
| BP | GO:0061061 | muscle structure development | None | Extended |
| BP | GO:0061136 | regulation of proteasomal protein catabolic process | None | Extended |
| BP | GO:0065007 | biological regulation | None | Extended |
| BP | GO:0065009 | regulation of molecular function | None | Extended |
| BP | GO:0070198 | protein localization to chromosome, telomeric region | IEA | AHRD |
| BP | GO:0070201 | regulation of establishment of protein localization | None | Extended |
| BP | GO:0070212 | protein poly-ADP-ribosylation | IEA | AHRD |
| BP | GO:0070213 | protein auto-ADP-ribosylation | IEA | AHRD |
| CC | GO:0070531 | BRCA1-A complex | IEA | AHRD |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | None | Extended |
| BP | GO:0070727 | cellular macromolecule localization | None | Extended |
| BP | GO:0070887 | cellular response to chemical stimulus | None | Extended |
| BP | GO:0070925 | organelle assembly | IEA | AHRD |
| BP | GO:0071310 | cellular response to organic substance | IEA | AHRD |
| BP | GO:0071704 | organic substance metabolic process | None | Extended |
| BP | GO:0071840 | cellular component organization or biogenesis | None | Extended |
| BP | GO:0072595 | maintenance of protein localization in organelle | None | Extended |
| BP | GO:0080090 | regulation of primary metabolic process | None | Extended |
| BP | GO:0085020 | protein K6-linked ubiquitination | IEA | AHRD |
| BP | GO:0090263 | positive regulation of canonical Wnt signaling pathway | IEA | AHRD |
| BP | GO:0090317 | negative regulation of intracellular protein transport | None | Extended |
| MF | GO:0097159 | organic cyclic compound binding | None | Extended |
| CC | GO:0099080 | supramolecular complex | None | Extended |
| CC | GO:0099081 | supramolecular polymer | None | Extended |
| CC | GO:0099512 | supramolecular fiber | None | Extended |
| CC | GO:0110165 | cellular anatomical entity | None | Extended |
| MF | GO:0140096 | catalytic activity, acting on a protein | None | Extended |
| MF | GO:0140110 | transcription regulator activity | None | Extended |
| CC | GO:0140513 | nuclear protein-containing complex | None | Extended |
| CC | GO:0140535 | intracellular protein-containing complex | None | Extended |
| MF | GO:1901363 | heterocyclic compound binding | None | Extended |
| BP | GO:1901564 | organonitrogen compound metabolic process | None | Extended |
| BP | GO:1901800 | positive regulation of proteasomal protein catabolic process | None | Extended |
| CC | GO:1902494 | catalytic complex | None | Extended |
| BP | GO:1902531 | regulation of intracellular signal transduction | IEA | AHRD |
| BP | GO:1902680 | positive regulation of RNA biosynthetic process | None | Extended |
| BP | GO:1903050 | regulation of proteolysis involved in protein catabolic process | None | Extended |
| BP | GO:1903052 | positive regulation of proteolysis involved in protein catabolic process | None | Extended |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | None | Extended |
| BP | GO:1903508 | positive regulation of nucleic acid-templated transcription | None | Extended |
| BP | GO:1903828 | negative regulation of protein localization | None | Extended |
| BP | GO:1904353 | regulation of telomere capping | None | Extended |
| BP | GO:1904355 | positive regulation of telomere capping | IEA | AHRD |
| BP | GO:1904356 | regulation of telomere maintenance via telomere lengthening | None | Extended |
| BP | GO:1904357 | negative regulation of telomere maintenance via telomere lengthening | IEA | AHRD |
| BP | GO:1904950 | negative regulation of establishment of protein localization | None | Extended |
| CC | GO:1990234 | transferase complex | None | Extended |
| MF | GO:1990404 | NAD+-protein ADP-ribosyltransferase activity | IEA | AHRD |
| BP | GO:2000058 | regulation of ubiquitin-dependent protein catabolic process | None | Extended |
| BP | GO:2000060 | positive regulation of ubiquitin-dependent protein catabolic process | None | Extended |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | None | Extended |
| BP | GO:2000113 | negative regulation of cellular macromolecule biosynthetic process | IEA | AHRD |
| BP | GO:2000278 | regulation of DNA biosynthetic process | None | Extended |
| BP | GO:2000573 | positive regulation of DNA biosynthetic process | IEA | AHRD |
| BP | GO:2001141 | regulation of RNA biosynthetic process | None | Extended |
| BP | GO:2001251 | negative regulation of chromosome organization | None | Extended |
| BP | GO:2001252 | positive regulation of chromosome organization | None | Extended |