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  5. SOLTUB.AGRIA.G00000031421

SOLTUB.AGRIA.G00000031421


Description : 30S ribosomal protein S2, chloroplastic


Gene families : OG_02_0000528 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000031421
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_204

Target Alias Description ECC score Gene Family Method Actions
SOLTUB.AGRIA.G00000044196 No alias ATP synthase subunit a, chloroplastic 0.04 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000044196 No alias ATP synthase subunit a, chloroplastic 0.04 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000044196 No alias ATP synthase subunit a, chloroplastic 0.04 Orthogroups with 8 Potato genotypes

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA AHRD
CC GO:0009570 chloroplast stroma IEA AHRD
CC GO:0022627 cytosolic small ribosomal subunit IEA AHRD
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Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP Predict GO terms from Neighborhoods
BP GO:0000746 obsolete conjugation IEP Predict GO terms from Neighborhoods
MF GO:0003954 NADH dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Predict GO terms from Neighborhoods
MF GO:0004707 MAP kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0006091 generation of precursor metabolites and energy IEP Predict GO terms from Neighborhoods
BP GO:0007112 male meiosis cytokinesis IEP Predict GO terms from Neighborhoods
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predict GO terms from Neighborhoods
MF GO:0009055 electron transfer activity IEP Predict GO terms from Neighborhoods
CC GO:0009535 chloroplast thylakoid membrane IEP Predict GO terms from Neighborhoods
CC GO:0009539 photosystem II reaction center IEP Predict GO terms from Neighborhoods
CC GO:0009575 chromoplast stroma IEP Predict GO terms from Neighborhoods
BP GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009875 pollen-pistil interaction IEP Predict GO terms from Neighborhoods
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predict GO terms from Neighborhoods
BP GO:0015990 electron transport coupled proton transport IEP Predict GO terms from Neighborhoods
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predict GO terms from Neighborhoods
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predict GO terms from Neighborhoods
BP GO:0019684 photosynthesis, light reaction IEP Predict GO terms from Neighborhoods
BP GO:0022900 electron transport chain IEP Predict GO terms from Neighborhoods
BP GO:0022904 respiratory electron transport chain IEP Predict GO terms from Neighborhoods
CC GO:0034357 photosynthetic membrane IEP Predict GO terms from Neighborhoods
CC GO:0035371 microtubule plus-end IEP Predict GO terms from Neighborhoods
BP GO:0042539 hypotonic salinity response IEP Predict GO terms from Neighborhoods
CC GO:0042651 thylakoid membrane IEP Predict GO terms from Neighborhoods
BP GO:0042773 ATP synthesis coupled electron transport IEP Predict GO terms from Neighborhoods
BP GO:0046785 microtubule polymerization IEP Predict GO terms from Neighborhoods
MF GO:0048038 quinone binding IEP Predict GO terms from Neighborhoods
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predict GO terms from Neighborhoods
CC GO:0055035 plastid thylakoid membrane IEP Predict GO terms from Neighborhoods
BP GO:0060178 regulation of exocyst localization IEP Predict GO terms from Neighborhoods
BP GO:0080136 priming of cellular response to stress IEP Predict GO terms from Neighborhoods
BP GO:1902065 response to L-glutamate IEP Predict GO terms from Neighborhoods
CC GO:1903754 cortical microtubule plus-end IEP Predict GO terms from Neighborhoods
CC GO:1904511 cytoplasmic microtubule plus-end IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 1 68
IPR023591 Ribosomal_S2_flav_dom_sf 1 73
No external refs found!