SOLTUB.AGRIA.G00000031691

Description : 40S ribosomal protein S24

Gene families : OG_02_0001005 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000031691
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_65

Target	Alias	Description	ECC score	Gene Family Method
SOLTUB.AGRIA.G00000003881	No alias	40S ribosomal protein S24	0.03	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000003881	No alias	40S ribosomal protein S24	0.03	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000003881	No alias	40S ribosomal protein S24	0.03	Orthogroups with 8 Potato genotypes

Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA	AHRD
BP	GO:0001889	liver development	None	Extended
BP	GO:0002181	cytoplasmic translation	IEA	AHRD
BP	GO:0002262	myeloid cell homeostasis	None	Extended
BP	GO:0002376	immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003735	structural constituent of ribosome	IEA	AHRD
MF	GO:0003743	translation initiation factor activity	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IEA	AHRD
CC	GO:0005730	nucleolus	IEA	AHRD
CC	GO:0005774	vacuolar membrane	IEA	AHRD
CC	GO:0005783	endoplasmic reticulum	IEA	AHRD
CC	GO:0005840	ribosome	None	Extended
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006412	translation	None	Extended
BP	GO:0006413	translational initiation	IEA	AHRD
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	IEA	AHRD
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022627	cytosolic small ribosomal subunit	IEA	AHRD
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0030490	maturation of SSU-rRNA	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031099	regeneration	None	Extended
BP	GO:0031100	animal organ regeneration	None	Extended
MF	GO:0031369	translation initiation factor binding	IEA	AHRD
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034101	erythrocyte homeostasis	IEA	AHRD
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
CC	GO:0042788	polysomal ribosome	IEA	AHRD
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048732	gland development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048872	homeostasis of number of cells	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097421	liver regeneration	IEA	AHRD
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000245	spliceosomal complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0000313	organellar ribosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0000387	spliceosomal snRNP assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0001221	transcription coregulator binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001223	transcription coactivator binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005654	nucleoplasm	IEP	Predict GO terms from Neighborhoods
CC	GO:0005682	U5 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005683	U7 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005684	U2-type spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005685	U1 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005686	U2 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005687	U4 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005689	U12-type spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005697	telomerase holoenzyme complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005884	actin filament	IEP	Predict GO terms from Neighborhoods
CC	GO:0005911	cell-cell junction	IEP	Predict GO terms from Neighborhoods
MF	GO:0008092	cytoskeletal protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008340	determination of adult lifespan	IEP	Predict GO terms from Neighborhoods
CC	GO:0009506	plasmodesma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009547	plastid ribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0014069	postsynaptic density	IEP	Predict GO terms from Neighborhoods
CC	GO:0015934	large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0017022	myosin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
CC	GO:0030054	cell junction	IEP	Predict GO terms from Neighborhoods
BP	GO:0030097	hemopoiesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0030684	preribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0030687	preribosome, large subunit precursor	IEP	Predict GO terms from Neighborhoods
BP	GO:0031396	regulation of protein ubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0031397	negative regulation of protein ubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0032984	protein-containing complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0032986	protein-DNA complex disassembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0034708	methyltransferase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0034709	methylosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0034715	pICln-Sm protein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0034719	SMN-Sm protein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0035166	post-embryonic hemopoiesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0035167	larval lymph gland hemopoiesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042255	ribosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0042273	ribosomal large subunit biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042303	molting cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0042633	hair cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0043009	chordate embryonic development	IEP	Predict GO terms from Neighborhoods
MF	GO:0043022	ribosome binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043186	P granule	IEP	Predict GO terms from Neighborhoods
CC	GO:0043253	chloroplast ribosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0045202	synapse	IEP	Predict GO terms from Neighborhoods
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0046677	response to antibiotic	IEP	Predict GO terms from Neighborhoods
BP	GO:0048534	hematopoietic or lymphoid organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048569	post-embryonic animal organ development	IEP	Predict GO terms from Neighborhoods
MF	GO:0051015	actin filament binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051348	negative regulation of transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051438	regulation of ubiquitin-protein transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051444	negative regulation of ubiquitin-protein transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Predict GO terms from Neighborhoods
MF	GO:0055105	ubiquitin-protein transferase inhibitor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0055106	ubiquitin-protein transferase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0065003	protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0070161	anchoring junction	IEP	Predict GO terms from Neighborhoods
MF	GO:0070180	large ribosomal subunit rRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070848	response to growth factor	IEP	Predict GO terms from Neighborhoods
CC	GO:0071004	U2-type prespliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071005	U2-type precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071007	U2-type catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071010	prespliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071011	precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071013	catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0071236	cellular response to antibiotic	IEP	Predict GO terms from Neighborhoods
BP	GO:0071363	cellular response to growth factor stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071495	cellular response to endogenous stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0072716	response to actinomycin D	IEP	Predict GO terms from Neighborhoods
BP	GO:0072717	cellular response to actinomycin D	IEP	Predict GO terms from Neighborhoods
CC	GO:0097525	spliceosomal snRNP complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0097526	spliceosomal tri-snRNP complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098554	cytoplasmic side of endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098556	cytoplasmic side of rough endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098562	cytoplasmic side of membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0099572	postsynaptic specialization	IEP	Predict GO terms from Neighborhoods
CC	GO:0120114	Sm-like protein family complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1901653	cellular response to peptide	IEP	Predict GO terms from Neighborhoods
BP	GO:1901796	regulation of signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:1901798	positive regulation of signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:1902626	assembly of large subunit precursor of preribosome	IEP	Predict GO terms from Neighborhoods
BP	GO:1903051	negative regulation of proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903321	negative regulation of protein modification by small protein conjugation or removal	IEP	Predict GO terms from Neighborhoods
BP	GO:1904666	regulation of ubiquitin protein ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1904667	negative regulation of ubiquitin protein ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1990089	response to nerve growth factor	IEP	Predict GO terms from Neighborhoods
BP	GO:1990090	cellular response to nerve growth factor stimulus	IEP	Predict GO terms from Neighborhoods
MF	GO:1990932	5.8S rRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:1990935	splicing factor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:1990948	ubiquitin ligase inhibitor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:2000059	negative regulation of ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001976	Ribosomal_S24e	26	103
IPR012678	Ribosomal_L23/L15e_core_dom_sf	6	108

External Links

No external refs found!

SOLTUB.AGRIA.G00000031691

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation