SOLTUB.AGRIA.G00000032105

Description : DNA mismatch repair protein

Gene families : OG_02_0006733 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000032105
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_216

Type	GO Term	Name	Evidence	Source
BP	GO:0000018	regulation of DNA recombination	None	Extended
BP	GO:0000075	cell cycle checkpoint signaling	None	Extended
BP	GO:0000077	DNA damage checkpoint signaling	None	Extended
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000710	meiotic mismatch repair	IEA	AHRD
BP	GO:0002200	somatic diversification of immune receptors	None	Extended
BP	GO:0002376	immune system process	None	Extended
BP	GO:0002566	somatic diversification of immune receptors via somatic mutation	None	Extended
BP	GO:0002637	regulation of immunoglobulin production	None	Extended
BP	GO:0002639	positive regulation of immunoglobulin production	None	Extended
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002684	positive regulation of immune system process	None	Extended
BP	GO:0002694	regulation of leukocyte activation	None	Extended
BP	GO:0002696	positive regulation of leukocyte activation	None	Extended
BP	GO:0002697	regulation of immune effector process	None	Extended
BP	GO:0002699	positive regulation of immune effector process	None	Extended
BP	GO:0002700	regulation of production of molecular mediator of immune response	None	Extended
BP	GO:0002702	positive regulation of production of molecular mediator of immune response	None	Extended
BP	GO:0002703	regulation of leukocyte mediated immunity	None	Extended
BP	GO:0002705	positive regulation of leukocyte mediated immunity	None	Extended
BP	GO:0002706	regulation of lymphocyte mediated immunity	None	Extended
BP	GO:0002708	positive regulation of lymphocyte mediated immunity	None	Extended
BP	GO:0002712	regulation of B cell mediated immunity	None	Extended
BP	GO:0002714	positive regulation of B cell mediated immunity	None	Extended
BP	GO:0002819	regulation of adaptive immune response	None	Extended
BP	GO:0002821	positive regulation of adaptive immune response	None	Extended
BP	GO:0002822	regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	None	Extended
BP	GO:0002824	positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	None	Extended
BP	GO:0002889	regulation of immunoglobulin mediated immune response	None	Extended
BP	GO:0002891	positive regulation of immunoglobulin mediated immune response	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003697	single-stranded DNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	IEA	AHRD
MF	GO:0004788	thiamine diphosphokinase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005694	chromosome	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006766	vitamin metabolic process	None	Extended
BP	GO:0006767	water-soluble vitamin metabolic process	None	Extended
BP	GO:0006772	thiamine metabolic process	IEA	AHRD
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007093	mitotic cell cycle checkpoint signaling	None	Extended
BP	GO:0007095	mitotic G2 DNA damage checkpoint signaling	IEA	AHRD
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0007346	regulation of mitotic cell cycle	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008284	positive regulation of cell population proliferation	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009110	vitamin biosynthetic process	None	Extended
BP	GO:0009229	thiamine diphosphate biosynthetic process	IEA	AHRD
BP	GO:0009555	pollen development	IEA	AHRD
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010564	regulation of cell cycle process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0010948	negative regulation of cell cycle process	None	Extended
BP	GO:0010972	negative regulation of G2/M transition of mitotic cell cycle	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016301	kinase activity	IEA	AHRD
BP	GO:0016310	phosphorylation	IEA	AHRD
BP	GO:0016445	somatic diversification of immunoglobulins	None	Extended
BP	GO:0016446	somatic hypermutation of immunoglobulin genes	IEA	AHRD
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016778	diphosphotransferase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
MF	GO:0019842	vitamin binding	None	Extended
MF	GO:0019899	enzyme binding	IEA	AHRD
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0030888	regulation of B cell proliferation	None	Extended
BP	GO:0030890	positive regulation of B cell proliferation	IEA	AHRD
MF	GO:0030975	thiamine binding	IEA	AHRD
MF	GO:0030983	mismatched DNA binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031570	DNA integrity checkpoint signaling	None	Extended
MF	GO:0032135	DNA insertion or deletion binding	None	Extended
MF	GO:0032138	single base insertion or deletion binding	IEA	AHRD
CC	GO:0032300	mismatch repair complex	None	Extended
CC	GO:0032389	MutLalpha complex	IEA	AHRD
MF	GO:0032404	mismatch repair complex binding	None	Extended
MF	GO:0032407	MutSalpha complex binding	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0032944	regulation of mononuclear cell proliferation	None	Extended
BP	GO:0032946	positive regulation of mononuclear cell proliferation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034308	primary alcohol metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
CC	GO:0035770	ribonucleoprotein granule	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEA	AHRD
BP	GO:0042127	regulation of cell population proliferation	None	Extended
BP	GO:0042357	thiamine diphosphate metabolic process	None	Extended
BP	GO:0042364	water-soluble vitamin biosynthetic process	None	Extended
BP	GO:0042723	thiamine-containing compound metabolic process	None	Extended
BP	GO:0042724	thiamine-containing compound biosynthetic process	None	Extended
BP	GO:0042770	signal transduction in response to DNA damage	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0043178	alcohol binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043570	maintenance of DNA repeat elements	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0044773	mitotic DNA damage checkpoint signaling	None	Extended
BP	GO:0044774	mitotic DNA integrity checkpoint signaling	None	Extended
BP	GO:0044818	mitotic G2/M transition checkpoint	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0045191	regulation of isotype switching	None	Extended
BP	GO:0045786	negative regulation of cell cycle	None	Extended
BP	GO:0045830	positive regulation of isotype switching	None	Extended
BP	GO:0045911	positive regulation of DNA recombination	None	Extended
BP	GO:0045930	negative regulation of mitotic cell cycle	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048296	regulation of isotype switching to IgA isotypes	None	Extended
BP	GO:0048298	positive regulation of isotype switching to IgA isotypes	IEA	AHRD
BP	GO:0048302	regulation of isotype switching to IgG isotypes	None	Extended
BP	GO:0048304	positive regulation of isotype switching to IgG isotypes	IEA	AHRD
BP	GO:0048316	seed development	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050670	regulation of lymphocyte proliferation	None	Extended
BP	GO:0050671	positive regulation of lymphocyte proliferation	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050778	positive regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050864	regulation of B cell activation	None	Extended
BP	GO:0050865	regulation of cell activation	None	Extended
BP	GO:0050867	positive regulation of cell activation	None	Extended
BP	GO:0050871	positive regulation of B cell activation	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051054	positive regulation of DNA metabolic process	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0051249	regulation of lymphocyte activation	None	Extended
BP	GO:0051251	positive regulation of lymphocyte activation	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070663	regulation of leukocyte proliferation	None	Extended
BP	GO:0070665	positive regulation of leukocyte proliferation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
MF	GO:1901681	sulfur compound binding	None	Extended
BP	GO:1901987	regulation of cell cycle phase transition	None	Extended
BP	GO:1901988	negative regulation of cell cycle phase transition	None	Extended
BP	GO:1901990	regulation of mitotic cell cycle phase transition	None	Extended
BP	GO:1901991	negative regulation of mitotic cell cycle phase transition	None	Extended
BP	GO:1902749	regulation of cell cycle G2/M phase transition	None	Extended
BP	GO:1902750	negative regulation of cell cycle G2/M phase transition	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended
BP	GO:1903047	mitotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009756	carbohydrate mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0010182	sugar mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0016556	mRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0080156	mitochondrial mRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:1900864	mitochondrial RNA modification	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007373	Thiamin_PyroPKinase_B1-bd	206	272
IPR036759	TPK_catalytic_sf	36	195
IPR006282	Thi_PPkinase	51	275
IPR020568	Ribosomal_S5_D2-typ_fold	505	641
IPR036890	HATPase_C_sf	323	524
IPR013507	DNA_mismatch_S5_2-like	522	640
IPR002099	DNA_mismatch_repair_N	308	620
IPR007371	TPK_catalytic	64	184
IPR036371	TPK_B1-bd_sf	199	281

External Links

No external refs found!

SOLTUB.AGRIA.G00000032105

Expression Profile

Co-expression Networks

Functional Annotation