SOLTUB.AGRIA.G00000032258


Description : ATP-dependent RNA helicase


Gene families : OG_02_0016614 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000032258
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_35


Type GO Term Name Evidence Source
CC GO:0000262 mitochondrial chromosome IEA AHRD
BP GO:0000958 mitochondrial mRNA catabolic process IEA AHRD
BP GO:0000962 positive regulation of mitochondrial RNA catabolic process IEA AHRD
BP GO:0001410 chlamydospore formation IEA AHRD
BP GO:0001889 liver development IEA AHRD
MF GO:0003677 DNA binding IEA AHRD
MF GO:0003678 DNA helicase activity IEA AHRD
MF GO:0003725 double-stranded RNA binding IEA AHRD
MF GO:0005524 ATP binding IEA AHRD
CC GO:0005634 nucleus IEA AHRD
BP GO:0006310 DNA recombination IEA AHRD
BP GO:0009060 aerobic respiration IEA AHRD
BP GO:0009555 pollen development IEA AHRD
BP GO:0009561 megagametogenesis IEA AHRD
BP GO:0009939 positive regulation of gibberellic acid mediated signaling pathway IEA AHRD
BP GO:0010929 positive regulation of auxin mediated signaling pathway IEA AHRD
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEA AHRD
BP GO:0030307 positive regulation of cell growth IEA AHRD
BP GO:0032508 DNA duplex unwinding IEA AHRD
MF GO:0034458 3'-5' RNA helicase activity IEA AHRD
BP GO:0035945 mitochondrial ncRNA surveillance IEA AHRD
BP GO:0035946 mitochondrial mRNA surveillance IEA AHRD
BP GO:0036177 filamentous growth of a population of unicellular organisms in response to pH IEA AHRD
BP GO:0036180 filamentous growth of a population of unicellular organisms in response to biotic stimulus IEA AHRD
BP GO:0036187 cell growth mode switching, budding to filamentous IEA AHRD
MF GO:0042803 protein homodimerization activity IEA AHRD
BP GO:0043066 negative regulation of apoptotic process IEA AHRD
BP GO:0044011 single-species biofilm formation on inanimate substrate IEA AHRD
BP GO:0044528 regulation of mitochondrial mRNA stability IEA AHRD
CC GO:0045025 mitochondrial degradosome IEA AHRD
BP GO:0070131 positive regulation of mitochondrial translation IEA AHRD
BP GO:0070584 mitochondrion morphogenesis IEA AHRD
BP GO:0070827 obsolete chromatin maintenance IEA AHRD
BP GO:0071467 cellular response to pH IEA AHRD
BP GO:0080038 positive regulation of cytokinin-activated signaling pathway IEA AHRD
BP GO:0090646 mitochondrial tRNA processing IEA AHRD
BP GO:0097222 mitochondrial mRNA polyadenylation IEA AHRD
BP GO:1901002 positive regulation of response to salt stress IEA AHRD
BP GO:1902584 positive regulation of response to water deprivation IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000280 nuclear division IEP Predict GO terms from Neighborhoods
CC GO:0000791 euchromatin IEP Predict GO terms from Neighborhoods
MF GO:0004175 endopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004177 aminopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004252 serine-type endopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004518 nuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004519 endonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004521 endoribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004540 ribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0006304 DNA modification IEP Predict GO terms from Neighborhoods
BP GO:0006305 DNA alkylation IEP Predict GO terms from Neighborhoods
BP GO:0006306 DNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Predict GO terms from Neighborhoods
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0006479 protein methylation IEP Predict GO terms from Neighborhoods
BP GO:0007276 gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0008213 protein alkylation IEP Predict GO terms from Neighborhoods
MF GO:0008236 serine-type peptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008238 exopeptidase activity IEP Predict GO terms from Neighborhoods
CC GO:0009507 chloroplast IEP Predict GO terms from Neighborhoods
CC GO:0009536 plastid IEP Predict GO terms from Neighborhoods
BP GO:0009554 megasporogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010528 regulation of transposition IEP Predict GO terms from Neighborhoods
BP GO:0010529 negative regulation of transposition IEP Predict GO terms from Neighborhoods
CC GO:0015030 Cajal body IEP Predict GO terms from Neighborhoods
BP GO:0016032 viral process IEP Predict GO terms from Neighborhoods
BP GO:0016556 mRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0016571 histone methylation IEP Predict GO terms from Neighborhoods
MF GO:0017171 serine hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0018022 peptidyl-lysine methylation IEP Predict GO terms from Neighborhoods
BP GO:0019048 modulation by virus of host process IEP Predict GO terms from Neighborhoods
BP GO:0030422 siRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0031047 gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:0031048 small non-coding RNA-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0031056 regulation of histone modification IEP Predict GO terms from Neighborhoods
BP GO:0031057 negative regulation of histone modification IEP Predict GO terms from Neighborhoods
BP GO:0031400 negative regulation of protein modification process IEP Predict GO terms from Neighborhoods
BP GO:0031507 heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0034293 sexual sporulation IEP Predict GO terms from Neighborhoods
BP GO:0034968 histone lysine methylation IEP Predict GO terms from Neighborhoods
MF GO:0035197 siRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0035198 miRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0035821 modulation of process of another organism IEP Predict GO terms from Neighborhoods
BP GO:0040029 epigenetic regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0043414 macromolecule methylation IEP Predict GO terms from Neighborhoods
BP GO:0044003 modulation by symbiont of host process IEP Predict GO terms from Neighborhoods
BP GO:0044728 DNA methylation or demethylation IEP Predict GO terms from Neighborhoods
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Predict GO terms from Neighborhoods
BP GO:0048236 plant-type sporogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048285 organelle fission IEP Predict GO terms from Neighborhoods
BP GO:0048481 plant ovule development IEP Predict GO terms from Neighborhoods
BP GO:0048533 sporocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0051259 protein complex oligomerization IEP Predict GO terms from Neighborhoods
BP GO:0051260 protein homooligomerization IEP Predict GO terms from Neighborhoods
BP GO:0051262 protein tetramerization IEP Predict GO terms from Neighborhoods
BP GO:0051289 protein homotetramerization IEP Predict GO terms from Neighborhoods
BP GO:0051321 meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0051567 histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051607 defense response to virus IEP Predict GO terms from Neighborhoods
BP GO:0051701 biological process involved in interaction with host IEP Predict GO terms from Neighborhoods
BP GO:0061647 histone H3-K9 modification IEP Predict GO terms from Neighborhoods
MF GO:0061980 regulatory RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0070008 serine-type exopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0070009 serine-type aminopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0070828 heterochromatin organization IEP Predict GO terms from Neighborhoods
BP GO:0070918 small regulatory ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0140013 meiotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0140546 defense response to symbiont IEP Predict GO terms from Neighborhoods
BP GO:0140718 facultative heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:1900865 chloroplast RNA modification IEP Predict GO terms from Neighborhoods
BP GO:1900871 chloroplast mRNA modification IEP Predict GO terms from Neighborhoods
BP GO:1904159 megasporocyte differentiation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR022192 SUV3_C 493 539
IPR041082 Suv3_C_1 427 468
IPR001650 Helicase_C 244 344
IPR027417 P-loop_NTPase 76 347
No external refs found!