SOLTUB.AGRIA.G00000003291


Description : Chromodomain-helicase-DNA-binding protein 1-like protein


Gene families : OG_02_0004348 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000003291
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_246


Type GO Term Name Evidence Source
BP GO:0000183 rDNA heterochromatin formation IEA AHRD
CC GO:0000793 condensed chromosome IEA AHRD
BP GO:0001410 chlamydospore formation IEA AHRD
CC GO:0001650 fibrillar center IEA AHRD
MF GO:0004386 helicase activity IEA AHRD
MF GO:0005524 ATP binding IEA AHRD
CC GO:0005677 chromatin silencing complex IEA AHRD
CC GO:0005829 cytosol IEA AHRD
CC GO:0005880 nuclear microtubule IEA AHRD
CC GO:0005886 plasma membrane IEA AHRD
BP GO:0006334 nucleosome assembly IEA AHRD
BP GO:0006352 DNA-templated transcription initiation IEA AHRD
BP GO:0006974 cellular response to DNA damage stimulus IEA AHRD
BP GO:0007420 brain development IEA AHRD
CC GO:0008623 CHRAC IEA AHRD
BP GO:0009414 response to water deprivation IEA AHRD
BP GO:0009561 megagametogenesis IEA AHRD
BP GO:0009651 response to salt stress IEA AHRD
BP GO:0009826 unidimensional cell growth IEA AHRD
BP GO:0010078 maintenance of root meristem identity IEA AHRD
BP GO:0010231 maintenance of seed dormancy IEA AHRD
BP GO:0010492 maintenance of shoot apical meristem identity IEA AHRD
MF GO:0015616 DNA translocase activity IEA AHRD
CC GO:0016581 NuRD complex IEA AHRD
BP GO:0016584 obsolete nucleosome positioning IEA AHRD
CC GO:0016589 NURF complex IEA AHRD
MF GO:0016887 ATP hydrolysis activity IEA AHRD
BP GO:0030182 neuron differentiation IEA AHRD
BP GO:0030447 filamentous growth IEA AHRD
CC GO:0030874 nucleolar chromatin IEA AHRD
CC GO:0031213 RSF complex IEA AHRD
MF GO:0031490 chromatin DNA binding IEA AHRD
CC GO:0032993 protein-DNA complex IEA AHRD
MF GO:0036310 ATP-dependent DNA/DNA annealing activity IEA AHRD
MF GO:0042393 histone binding IEA AHRD
CC GO:0043596 nuclear replication fork IEA AHRD
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEA AHRD
BP GO:0046020 obsolete negative regulation of transcription from RNA polymerase II promoter by pheromones IEA AHRD
BP GO:0048510 regulation of timing of transition from vegetative to reproductive phase IEA AHRD
BP GO:0060195 negative regulation of antisense RNA transcription IEA AHRD
BP GO:0060303 obsolete regulation of nucleosome density IEA AHRD
MF GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding IEA AHRD
BP GO:0071280 cellular response to copper ion IEA AHRD
CC GO:0090537 CERF complex IEA AHRD
BP GO:1900036 positive regulation of cellular response to heat IEA AHRD
BP GO:1902275 regulation of chromatin organization IEA AHRD
BP GO:1990830 cellular response to leukemia inhibitory factor IEA AHRD
BP GO:2000177 regulation of neural precursor cell proliferation IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0000904 cell morphogenesis involved in differentiation IEP Predict GO terms from Neighborhoods
MF GO:0001221 transcription coregulator binding IEP Predict GO terms from Neighborhoods
MF GO:0001223 transcription coactivator binding IEP Predict GO terms from Neighborhoods
BP GO:0001501 skeletal system development IEP Predict GO terms from Neighborhoods
BP GO:0001573 ganglioside metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0001669 acrosomal vesicle IEP Predict GO terms from Neighborhoods
BP GO:0001894 tissue homeostasis IEP Predict GO terms from Neighborhoods
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0004190 aspartic-type endopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predict GO terms from Neighborhoods
MF GO:0004563 beta-N-acetylhexosaminidase activity IEP Predict GO terms from Neighborhoods
MF GO:0005537 mannose binding IEP Predict GO terms from Neighborhoods
CC GO:0005615 extracellular space IEP Predict GO terms from Neighborhoods
CC GO:0005788 endoplasmic reticulum lumen IEP Predict GO terms from Neighborhoods
CC GO:0005791 rough endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0006011 UDP-glucose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006022 aminoglycan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006040 amino sugar metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006044 N-acetylglucosamine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006123 mitochondrial electron transport, cytochrome c to oxygen IEP Predict GO terms from Neighborhoods
BP GO:0006487 protein N-linked glycosylation IEP Predict GO terms from Neighborhoods
BP GO:0006491 N-glycan processing IEP Predict GO terms from Neighborhoods
BP GO:0006517 protein deglycosylation IEP Predict GO terms from Neighborhoods
BP GO:0006664 glycolipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006665 sphingolipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006672 ceramide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006687 glycosphingolipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006689 ganglioside catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006952 defense response IEP Predict GO terms from Neighborhoods
BP GO:0007040 lysosome organization IEP Predict GO terms from Neighborhoods
BP GO:0007272 ensheathment of neurons IEP Predict GO terms from Neighborhoods
BP GO:0007292 female gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0007341 penetration of zona pellucida IEP Predict GO terms from Neighborhoods
BP GO:0007605 sensory perception of sound IEP Predict GO terms from Neighborhoods
BP GO:0007617 mating behavior IEP Predict GO terms from Neighborhoods
BP GO:0007619 courtship behavior IEP Predict GO terms from Neighborhoods
BP GO:0007628 adult walking behavior IEP Predict GO terms from Neighborhoods
BP GO:0007639 homeostasis of number of meristem cells IEP Predict GO terms from Neighborhoods
CC GO:0008023 transcription elongation factor complex IEP Predict GO terms from Neighborhoods
CC GO:0008024 cyclin/CDK positive transcription elongation factor complex IEP Predict GO terms from Neighborhoods
BP GO:0008049 male courtship behavior IEP Predict GO terms from Neighborhoods
BP GO:0008344 adult locomotory behavior IEP Predict GO terms from Neighborhoods
BP GO:0008347 glial cell migration IEP Predict GO terms from Neighborhoods
BP GO:0008366 axon ensheathment IEP Predict GO terms from Neighborhoods
BP GO:0009057 macromolecule catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009100 glycoprotein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009225 nucleotide-sugar metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009313 oligosaccharide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009615 response to virus IEP Predict GO terms from Neighborhoods
BP GO:0009720 detection of hormone stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009726 detection of endogenous stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009729 detection of brassinosteroid stimulus IEP Predict GO terms from Neighborhoods
BP GO:0010262 somatic embryogenesis IEP Predict GO terms from Neighborhoods
MF GO:0015026 coreceptor activity IEP Predict GO terms from Neighborhoods
MF GO:0015929 hexosaminidase activity IEP Predict GO terms from Neighborhoods
MF GO:0016231 beta-N-acetylglucosaminidase activity IEP Predict GO terms from Neighborhoods
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predict GO terms from Neighborhoods
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predict GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0018196 peptidyl-asparagine modification IEP Predict GO terms from Neighborhoods
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Predict GO terms from Neighborhoods
BP GO:0019083 viral transcription IEP Predict GO terms from Neighborhoods
BP GO:0019085 early viral transcription IEP Predict GO terms from Neighborhoods
BP GO:0019086 late viral transcription IEP Predict GO terms from Neighborhoods
BP GO:0019098 reproductive behavior IEP Predict GO terms from Neighborhoods
MF GO:0019209 kinase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0019377 glycolipid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019646 aerobic electron transport chain IEP Predict GO terms from Neighborhoods
CC GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex IEP Predict GO terms from Neighborhoods
BP GO:0019915 lipid storage IEP Predict GO terms from Neighborhoods
BP GO:0022904 respiratory electron transport chain IEP Predict GO terms from Neighborhoods
BP GO:0030149 sphingolipid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0030163 protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0030203 glycosaminoglycan metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0030246 carbohydrate binding IEP Predict GO terms from Neighborhoods
MF GO:0030295 protein kinase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0030534 adult behavior IEP Predict GO terms from Neighborhoods
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP Predict GO terms from Neighborhoods
CC GO:0032806 carboxy-terminal domain protein kinase complex IEP Predict GO terms from Neighborhoods
MF GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity IEP Predict GO terms from Neighborhoods
BP GO:0035694 mitochondrial protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0040014 regulation of multicellular organism growth IEP Predict GO terms from Neighborhoods
BP GO:0040015 negative regulation of multicellular organism growth IEP Predict GO terms from Neighborhoods
BP GO:0042552 myelination IEP Predict GO terms from Neighborhoods
MF GO:0043539 protein serine/threonine kinase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0043615 astrocyte cell migration IEP Predict GO terms from Neighborhoods
BP GO:0044706 multi-multicellular organism process IEP Predict GO terms from Neighborhoods
BP GO:0045089 positive regulation of innate immune response IEP Predict GO terms from Neighborhoods
BP GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0046466 membrane lipid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046479 glycosphingolipid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046514 ceramide catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0048029 monosaccharide binding IEP Predict GO terms from Neighborhoods
BP GO:0048477 oogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048667 cell morphogenesis involved in neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:0048873 homeostasis of number of cells within a tissue IEP Predict GO terms from Neighborhoods
BP GO:0050884 neuromuscular process controlling posture IEP Predict GO terms from Neighborhoods
BP GO:0050885 neuromuscular process controlling balance IEP Predict GO terms from Neighborhoods
BP GO:0050905 neuromuscular process IEP Predict GO terms from Neighborhoods
BP GO:0050954 sensory perception of mechanical stimulus IEP Predict GO terms from Neighborhoods
BP GO:0051147 regulation of muscle cell differentiation IEP Predict GO terms from Neighborhoods
MF GO:0051787 misfolded protein binding IEP Predict GO terms from Neighborhoods
BP GO:0060179 male mating behavior IEP Predict GO terms from Neighborhoods
BP GO:0060395 SMAD protein signal transduction IEP Predict GO terms from Neighborhoods
CC GO:0060473 cortical granule IEP Predict GO terms from Neighborhoods
MF GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity IEP Predict GO terms from Neighborhoods
MF GO:0070001 aspartic-type peptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0070063 RNA polymerase binding IEP Predict GO terms from Neighborhoods
BP GO:0071712 ER-associated misfolded protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0071902 positive regulation of protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0080171 lytic vacuole organization IEP Predict GO terms from Neighborhoods
BP GO:0090659 walking behavior IEP Predict GO terms from Neighborhoods
MF GO:0097322 7SK snRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0097359 UDP-glucosylation IEP Predict GO terms from Neighborhoods
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901565 organonitrogen compound catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903509 liposaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:1904031 positive regulation of cyclin-dependent protein kinase activity IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001650 Helicase_C 354 474
IPR027417 P-loop_NTPase 159 494
IPR027417 P-loop_NTPase 20 260
IPR000330 SNF2_N 88 333
No external refs found!