SOLTUB.AGRIA.G00000033082

Description : Polyubiquitin

Gene families : OG_02_0000884 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000033082
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_31

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005773	vacuole	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	AHRD
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009692	ethylene metabolic process	None	Extended
BP	GO:0009693	ethylene biosynthetic process	IEA	AHRD
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010224	response to UV-B	IEA	AHRD
CC	GO:0016020	membrane	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	AHRD
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
MF	GO:0031386	protein tag	IEA	AHRD
MF	GO:0031625	ubiquitin protein ligase binding	IEA	AHRD
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043449	cellular alkene metabolic process	None	Extended
BP	GO:0043450	alkene biosynthetic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0044389	ubiquitin-like protein ligase binding	None	Extended
BP	GO:0045116	protein neddylation	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120251	hydrocarbon biosynthetic process	None	Extended
BP	GO:0120252	hydrocarbon metabolic process	None	Extended
BP	GO:0120254	olefinic compound metabolic process	None	Extended
BP	GO:0120255	olefinic compound biosynthetic process	None	Extended
BP	GO:1900673	olefin metabolic process	None	Extended
BP	GO:1900674	olefin biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0001505	regulation of neurotransmitter levels	IEP	Predict GO terms from Neighborhoods
MF	GO:0001530	lipopolysaccharide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001745	compound eye morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0002028	regulation of sodium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0002090	regulation of receptor internalization	IEP	Predict GO terms from Neighborhoods
BP	GO:0002700	regulation of production of molecular mediator of immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002759	regulation of antimicrobial humoral response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002784	regulation of antimicrobial peptide production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002786	regulation of antibacterial peptide production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002861	regulation of inflammatory response to antigenic stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0002862	negative regulation of inflammatory response to antigenic stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0002920	regulation of humoral immune response	IEP	Predict GO terms from Neighborhoods
MF	GO:0004129	cytochrome-c oxidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004175	endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005507	copper ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0005513	detection of calcium ion	IEP	Predict GO terms from Neighborhoods
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	Predict GO terms from Neighborhoods
CC	GO:0005750	mitochondrial respiratory chain complex III	IEP	Predict GO terms from Neighborhoods
CC	GO:0005751	mitochondrial respiratory chain complex IV	IEP	Predict GO terms from Neighborhoods
CC	GO:0005753	mitochondrial proton-transporting ATP synthase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005758	mitochondrial intermembrane space	IEP	Predict GO terms from Neighborhoods
CC	GO:0005795	Golgi stack	IEP	Predict GO terms from Neighborhoods
CC	GO:0005798	Golgi-associated vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Predict GO terms from Neighborhoods
BP	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c	IEP	Predict GO terms from Neighborhoods
BP	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen	IEP	Predict GO terms from Neighborhoods
BP	GO:0006124	ferredoxin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006406	mRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006836	neurotransmitter transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006878	cellular copper ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006893	Golgi to plasma membrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006900	vesicle budding from membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0007098	centrosome cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0007112	male meiosis cytokinesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0007264	small GTPase mediated signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0007265	Ras protein signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0007269	neurotransmitter secretion	IEP	Predict GO terms from Neighborhoods
MF	GO:0008047	enzyme activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008535	respiratory chain complex IV assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0008541	proteasome regulatory particle, lid subcomplex	IEP	Predict GO terms from Neighborhoods
MF	GO:0009055	electron transfer activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009060	aerobic respiration	IEP	Predict GO terms from Neighborhoods
CC	GO:0009578	etioplast stroma	IEP	Predict GO terms from Neighborhoods
BP	GO:0009767	photosynthetic electron transport chain	IEP	Predict GO terms from Neighborhoods
BP	GO:0010257	NADH dehydrogenase complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0010324	membrane invagination	IEP	Predict GO terms from Neighborhoods
BP	GO:0010498	proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010499	proteasomal ubiquitin-independent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010765	positive regulation of sodium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0010883	regulation of lipid storage	IEP	Predict GO terms from Neighborhoods
BP	GO:0014041	regulation of neuron maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:0014042	positive regulation of neuron maturation	IEP	Predict GO terms from Neighborhoods
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016004	phospholipase activator activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016504	peptidase activator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016675	oxidoreductase activity, acting on a heme group of donors	IEP	Predict GO terms from Neighborhoods
BP	GO:0017004	cytochrome complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0017158	regulation of calcium ion-dependent exocytosis	IEP	Predict GO terms from Neighborhoods
MF	GO:0019003	GDP binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0019646	aerobic electron transport chain	IEP	Predict GO terms from Neighborhoods
CC	GO:0019774	proteasome core complex, beta-subunit complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0022900	electron transport chain	IEP	Predict GO terms from Neighborhoods
BP	GO:0022904	respiratory electron transport chain	IEP	Predict GO terms from Neighborhoods
BP	GO:0023061	signal release	IEP	Predict GO terms from Neighborhoods
CC	GO:0030017	sarcomere	IEP	Predict GO terms from Neighborhoods
CC	GO:0030061	mitochondrial crista	IEP	Predict GO terms from Neighborhoods
CC	GO:0030117	membrane coat	IEP	Predict GO terms from Neighborhoods
CC	GO:0030120	vesicle coat	IEP	Predict GO terms from Neighborhoods
CC	GO:0030126	COPI vesicle coat	IEP	Predict GO terms from Neighborhoods
CC	GO:0030137	COPI-coated vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0030163	protein catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0030964	NADH dehydrogenase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031023	microtubule organizing center organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0031090	organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031252	cell leading edge	IEP	Predict GO terms from Neighborhoods
CC	GO:0031970	organelle envelope lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032011	ARF protein signal transduction	IEP	Predict GO terms from Neighborhoods
CC	GO:0032154	cleavage furrow	IEP	Predict GO terms from Neighborhoods
BP	GO:0032506	cytokinetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032981	mitochondrial respiratory chain complex I assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0033108	mitochondrial respiratory chain complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Predict GO terms from Neighborhoods
BP	GO:0033206	meiotic cytokinesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0033617	mitochondrial cytochrome c oxidase assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0034067	protein localization to Golgi apparatus	IEP	Predict GO terms from Neighborhoods
BP	GO:0034315	regulation of Arp2/3 complex-mediated actin nucleation	IEP	Predict GO terms from Neighborhoods
BP	GO:0034377	plasma lipoprotein particle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0034379	very-low-density lipoprotein particle assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0034515	proteasome storage granule	IEP	Predict GO terms from Neighborhoods
CC	GO:0036064	ciliary basal body	IEP	Predict GO terms from Neighborhoods
BP	GO:0036090	cleavage furrow ingression	IEP	Predict GO terms from Neighborhoods
BP	GO:0043001	Golgi to plasma membrane protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0043169	cation binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043248	proteasome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0045259	proton-transporting ATP synthase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Predict GO terms from Neighborhoods
CC	GO:0045271	respiratory chain complex I	IEP	Predict GO terms from Neighborhoods
CC	GO:0045275	respiratory chain complex III	IEP	Predict GO terms from Neighborhoods
CC	GO:0045277	respiratory chain complex IV	IEP	Predict GO terms from Neighborhoods
BP	GO:0045333	cellular respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0045921	positive regulation of exocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0045956	positive regulation of calcium ion-dependent exocytosis	IEP	Predict GO terms from Neighborhoods
MF	GO:0046872	metal ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0046914	transition metal ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0048167	regulation of synaptic plasticity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048193	Golgi vesicle transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0048259	regulation of receptor-mediated endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048488	synaptic vesicle endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048592	eye morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050708	regulation of protein secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0050714	positive regulation of protein secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0050727	regulation of inflammatory response	IEP	Predict GO terms from Neighborhoods
BP	GO:0050728	negative regulation of inflammatory response	IEP	Predict GO terms from Neighborhoods
BP	GO:0050805	negative regulation of synaptic transmission	IEP	Predict GO terms from Neighborhoods
MF	GO:0050897	cobalt ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051125	regulation of actin nucleation	IEP	Predict GO terms from Neighborhoods
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0055070	copper ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055108	Golgi to transport vesicle transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0060229	lipase activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060292	long-term synaptic depression	IEP	Predict GO terms from Neighborhoods
BP	GO:0060628	regulation of ER to Golgi vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0060998	regulation of dendritic spine development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060999	positive regulation of dendritic spine development	IEP	Predict GO terms from Neighborhoods
MF	GO:0061133	endopeptidase activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0061484	hematopoietic stem cell homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0061951	establishment of protein localization to plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0065003	protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0065005	protein-lipid complex assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0070003	threonine-type peptidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0070069	cytochrome complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0070142	synaptic vesicle budding	IEP	Predict GO terms from Neighborhoods
BP	GO:0071825	protein-lipid complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071827	plasma lipoprotein particle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0090596	sensory organ morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0097061	dendritic spine organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0097212	lysosomal membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0098586	cellular response to virus	IEP	Predict GO terms from Neighborhoods
CC	GO:0098796	membrane protein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098798	mitochondrial protein-containing complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098803	respiratory chain complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0098974	postsynaptic actin cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0099024	plasma membrane invagination	IEP	Predict GO terms from Neighborhoods
BP	GO:0099173	postsynapse organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0099188	postsynaptic cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0099612	protein localization to axon	IEP	Predict GO terms from Neighborhoods
BP	GO:0099643	signal release from synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0106027	neuron projection organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0140238	presynaptic endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:1902305	regulation of sodium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1902307	positive regulation of sodium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1902410	mitotic cytokinetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1902495	transmembrane transporter complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1902822	regulation of late endosome to lysosome transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1902824	positive regulation of late endosome to lysosome transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1902953	positive regulation of ER to Golgi vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903292	protein localization to Golgi membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1903305	regulation of regulated secretory pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1903307	positive regulation of regulated secretory pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1903335	regulation of vacuolar transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903337	positive regulation of vacuolar transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903429	regulation of cell maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903431	positive regulation of cell maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903725	regulation of phospholipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904799	regulation of neuron remodeling	IEP	Predict GO terms from Neighborhoods
BP	GO:1904801	positive regulation of neuron remodeling	IEP	Predict GO terms from Neighborhoods
CC	GO:1990204	oxidoreductase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1990351	transporter complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1990386	mitotic cleavage furrow ingression	IEP	Predict GO terms from Neighborhoods
MF	GO:1990583	phospholipase D activator activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR029071	Ubiquitin-like_domsf	79	153
IPR000626	Ubiquitin-like_dom	79	150
IPR000626	Ubiquitin-like_dom	3	74
IPR029071	Ubiquitin-like_domsf	1	76

External Links

No external refs found!

SOLTUB.AGRIA.G00000033082

Expression Profile

Co-expression Networks

Functional Annotation