SOLTUB.AGRIA.G00000033364

Description : Regulator of chromosome condensation (RCC1) family protein

Gene families : OG_02_0016749 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000033364
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_167

Type	GO Term	Name	Evidence	Source
BP	GO:0002376	immune system process	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	AHRD
CC	GO:0005856	cytoskeleton	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	IEA	AHRD
BP	GO:0006996	organelle organization	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010564	regulation of cell cycle process	IEA	AHRD
CC	GO:0012505	endomembrane system	IEA	AHRD
CC	GO:0015630	microtubule cytoskeleton	IEA	AHRD
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0019899	enzyme binding	IEA	AHRD
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022607	cellular component assembly	IEA	AHRD
BP	GO:0030154	cell differentiation	IEA	AHRD
CC	GO:0031090	organelle membrane	IEA	AHRD
CC	GO:0031410	cytoplasmic vesicle	IEA	AHRD
CC	GO:0031974	membrane-enclosed lumen	None	Extended
CC	GO:0031981	nuclear lumen	IEA	AHRD
CC	GO:0031982	vesicle	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032879	regulation of localization	IEA	AHRD
MF	GO:0043167	ion binding	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0043233	organelle lumen	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	IEA	AHRD
BP	GO:0044260	cellular macromolecule metabolic process	IEA	AHRD
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0048513	animal organ development	IEA	AHRD
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	IEA	AHRD
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051128	regulation of cellular component organization	IEA	AHRD
BP	GO:0051707	response to other organism	IEA	AHRD
BP	GO:0051716	cellular response to stimulus	IEA	AHRD
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
CC	GO:0070013	intracellular organelle lumen	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903047	mitotic cell cycle process	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
BP	GO:0000002	mitochondrial genome maintenance	IEP	Predict GO terms from Neighborhoods
MF	GO:0000822	inositol hexakisphosphate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001825	blastocyst formation	IEP	Predict GO terms from Neighborhoods
MF	GO:0004132	dCMP deaminase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004602	glutathione peroxidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005686	U2 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005689	U12-type spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005934	cellular bud tip	IEP	Predict GO terms from Neighborhoods
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006226	dUMP biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006231	dTMP biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006409	tRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006415	translational termination	IEP	Predict GO terms from Neighborhoods
BP	GO:0006448	regulation of translational elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006559	L-phenylalanine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006570	tyrosine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006572	tyrosine catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008494	translation activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008612	peptidyl-lysine modification to peptidyl-hypusine	IEP	Predict GO terms from Neighborhoods
BP	GO:0009129	pyrimidine nucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009130	pyrimidine nucleoside monophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009157	deoxyribonucleoside monophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009162	deoxyribonucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009176	pyrimidine deoxyribonucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009177	pyrimidine deoxyribonucleoside monophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009219	pyrimidine deoxyribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009221	pyrimidine deoxyribonucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009265	2'-deoxyribonucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009394	2'-deoxyribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009806	lignan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009807	lignan biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0010283	pinoresinol reductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010288	response to lead ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0015692	lead ion transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0016034	maleylacetoacetate isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016208	AMP binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Predict GO terms from Neighborhoods
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
MF	GO:0019135	deoxyhypusine monooxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019239	deaminase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019692	deoxyribose phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031152	aggregation involved in sorocarp development	IEP	Predict GO terms from Neighborhoods
BP	GO:0031288	sorocarp morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0032056	positive regulation of translation in response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0032058	positive regulation of translational initiation in response to stress	IEP	Predict GO terms from Neighborhoods
MF	GO:0032442	phenylcoumaran benzylic ether reductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0033194	response to hydroperoxide	IEP	Predict GO terms from Neighborhoods
CC	GO:0033391	chromatoid body	IEP	Predict GO terms from Neighborhoods
BP	GO:0035212	cell competition in a multicellular organism	IEP	Predict GO terms from Neighborhoods
BP	GO:0036176	response to neutral pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0036177	filamentous growth of a population of unicellular organisms in response to pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0036178	filamentous growth of a population of unicellular organisms in response to neutral pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0042710	biofilm formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043555	regulation of translation in response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0043558	regulation of translational initiation in response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0044010	single-species biofilm formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044011	single-species biofilm formation on inanimate substrate	IEP	Predict GO terms from Neighborhoods
CC	GO:0044614	nuclear pore cytoplasmic filaments	IEP	Predict GO terms from Neighborhoods
BP	GO:0045948	positive regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046073	dTMP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046078	dUMP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046385	deoxyribose phosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046937	phytochelatin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046938	phytochelatin biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0050077	maleylpyruvate isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	Predict GO terms from Neighborhoods
BP	GO:0051031	tRNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051703	biological process involved in intraspecies interaction between organisms	IEP	Predict GO terms from Neighborhoods
BP	GO:0071230	cellular response to amino acid stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071232	cellular response to histidine	IEP	Predict GO terms from Neighborhoods
BP	GO:0071262	regulation of translational initiation in response to starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071264	positive regulation of translational initiation in response to starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071284	cellular response to lead ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0080052	response to histidine	IEP	Predict GO terms from Neighborhoods
BP	GO:0090605	submerged biofilm formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090609	single-species submerged biofilm formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0097064	ncRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0098630	aggregation of unicellular organisms	IEP	Predict GO terms from Neighborhoods
BP	GO:0098743	cell aggregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0120253	hydrocarbon catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901170	naphthalene catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901999	homogentisate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902000	homogentisate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902222	erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000434	regulation of protein neddylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000436	positive regulation of protein neddylation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR009091	RCC1/BLIP-II	26	441
IPR000408	Reg_chr_condens	139	189
IPR000408	Reg_chr_condens	394	440
IPR000408	Reg_chr_condens	31	81
IPR000408	Reg_chr_condens	84	136
IPR000408	Reg_chr_condens	346	388

External Links

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SOLTUB.AGRIA.G00000033364

Expression Profile

Co-expression Networks

Functional Annotation