SOLTUB.AGRIA.G00000033365

Description : Ras-related protein Rab-2A

Gene families : OG_02_0001430 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000033365
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_35

Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEA	AHRD
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
MF	GO:0005525	GTP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005768	endosome	None	Extended
CC	GO:0005774	vacuolar membrane	None	Extended
CC	GO:0005789	endoplasmic reticulum membrane	IEA	AHRD
CC	GO:0005802	trans-Golgi network	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	AHRD
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEA	AHRD
BP	GO:0006892	post-Golgi vesicle-mediated transport	None	Extended
BP	GO:0006895	Golgi to endosome transport	IEA	AHRD
BP	GO:0006909	phagocytosis	IEA	AHRD
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007030	Golgi organization	IEA	AHRD
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007166	cell surface receptor signaling pathway	None	Extended
BP	GO:0007167	enzyme-linked receptor protein signaling pathway	None	Extended
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	None	Extended
BP	GO:0007264	small GTPase mediated signal transduction	None	Extended
BP	GO:0007265	Ras protein signal transduction	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008219	cell death	IEA	AHRD
BP	GO:0008543	fibroblast growth factor receptor signaling pathway	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0010008	endosome membrane	None	Extended
CC	GO:0012506	vesicle membrane	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
BP	GO:0017157	regulation of exocytosis	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0019003	GDP binding	IEA	AHRD
BP	GO:0030100	regulation of endocytosis	IEA	AHRD
CC	GO:0030139	endocytic vesicle	None	Extended
BP	GO:0030587	sorocarp development	IEA	AHRD
CC	GO:0030659	cytoplasmic vesicle membrane	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031164	contractile vacuolar membrane	IEA	AHRD
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031225	anchored component of membrane	None	Extended
CC	GO:0031300	intrinsic component of organelle membrane	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031901	early endosome membrane	IEA	AHRD
CC	GO:0031982	vesicle	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032456	endocytic recycling	IEA	AHRD
BP	GO:0032482	Rab protein signal transduction	IEA	AHRD
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	IEA	AHRD
BP	GO:0033036	macromolecule localization	None	Extended
CC	GO:0033116	endoplasmic reticulum-Golgi intermediate compartment membrane	IEA	AHRD
BP	GO:0035556	intracellular signal transduction	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
CC	GO:0042470	melanosome	IEA	AHRD
BP	GO:0042742	defense response to bacterium	IEA	AHRD
CC	GO:0043025	neuronal cell body	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044297	cell body	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
CC	GO:0045335	phagocytic vesicle	IEA	AHRD
BP	GO:0045921	positive regulation of exocytosis	IEA	AHRD
BP	GO:0045995	regulation of embryonic development	IEA	AHRD
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0047484	regulation of response to osmotic stress	IEA	AHRD
BP	GO:0048193	Golgi vesicle transport	None	Extended
CC	GO:0048471	perinuclear region of cytoplasm	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
CC	GO:0048770	pigment granule	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051046	regulation of secretion	None	Extended
BP	GO:0051047	positive regulation of secretion	None	Extended
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051050	positive regulation of transport	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0051703	biological process involved in intraspecies interaction between organisms	None	Extended
BP	GO:0051707	response to other organism	None	Extended
CC	GO:0055037	recycling endosome	IEA	AHRD
BP	GO:0060341	regulation of cellular localization	None	Extended
BP	GO:0060627	regulation of vesicle-mediated transport	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0090382	phagosome maturation	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0098563	intrinsic component of synaptic vesicle membrane	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098791	Golgi apparatus subcompartment	None	Extended
BP	GO:0098876	vesicle-mediated transport to the plasma membrane	None	Extended
CC	GO:0098993	anchored component of synaptic vesicle membrane	IEA	AHRD
BP	GO:0099120	socially cooperative development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903530	regulation of secretion by cell	None	Extended
BP	GO:1903532	positive regulation of secretion by cell	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000722	telomere maintenance via recombination	IEP	Predict GO terms from Neighborhoods
CC	GO:0000793	condensed chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0000794	condensed nuclear chromosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0000825	inositol tetrakisphosphate 6-kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003684	damaged DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004373	glycogen (starch) synthase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005662	DNA replication factor A complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0005982	starch metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006020	inositol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006066	alcohol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006265	DNA topological change	IEP	Predict GO terms from Neighborhoods
BP	GO:0006268	DNA unwinding involved in DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006278	RNA-templated DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006289	nucleotide-excision repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006312	mitotic recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0006772	thiamine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007004	telomere maintenance via telomerase	IEP	Predict GO terms from Neighborhoods
BP	GO:0007127	meiosis I	IEP	Predict GO terms from Neighborhoods
BP	GO:0007140	male meiotic nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0007141	male meiosis I	IEP	Predict GO terms from Neighborhoods
BP	GO:0007602	phototransduction	IEP	Predict GO terms from Neighborhoods
MF	GO:0008661	1-deoxy-D-xylulose-5-phosphate synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0009011	starch synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009228	thiamine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009501	amyloplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0009585	red, far-red light phototransduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0009638	phototropism	IEP	Predict GO terms from Neighborhoods
BP	GO:0009692	ethylene metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009693	ethylene biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009704	de-etiolation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009785	blue light signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010021	amylopectin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010047	fruit dehiscence	IEP	Predict GO terms from Neighborhoods
BP	GO:0010161	red light signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010187	negative regulation of seed germination	IEP	Predict GO terms from Neighborhoods
BP	GO:0010244	response to low fluence blue light stimulus by blue low-fluence system	IEP	Predict GO terms from Neighborhoods
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010600	regulation of auxin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010833	telomere maintenance via telomere lengthening	IEP	Predict GO terms from Neighborhoods
BP	GO:0015994	chlorophyll metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0015995	chlorophyll biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016744	transketolase or transaldolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019171	3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019252	starch biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019751	polyol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030491	heteroduplex formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031539	positive regulation of anthocyanin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032508	DNA duplex unwinding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032957	inositol trisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0033201	alpha-1,4-glucan synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034308	primary alcohol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034309	primary alcohol biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0042162	telomeric DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042440	pigment metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	Predict GO terms from Neighborhoods
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0043047	single-stranded telomeric DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043449	cellular alkene metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043450	alkene biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043647	inositol phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046148	pigment biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046165	alcohol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046173	polyol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046835	carbohydrate phosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0047325	inositol tetrakisphosphate 1-kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048440	carpel development	IEP	Predict GO terms from Neighborhoods
BP	GO:0051026	chiasma assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0051717	inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0051765	inositol tetrakisphosphate kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0051766	inositol trisphosphate kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052725	inositol-1,3,4-trisphosphate 6-kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052726	inositol-1,3,4-trisphosphate 5-kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052743	inositol tetrakisphosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052745	inositol phosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0052746	inositol phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0052863	1-deoxy-D-xylulose 5-phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052865	1-deoxy-D-xylulose 5-phosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061982	meiosis I cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071483	cellular response to blue light	IEP	Predict GO terms from Neighborhoods
BP	GO:0071491	cellular response to red light	IEP	Predict GO terms from Neighborhoods
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0080006	internode patterning	IEP	Predict GO terms from Neighborhoods
BP	GO:0080113	regulation of seed growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0090227	regulation of red or far-red light signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090229	negative regulation of red or far-red light signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090407	organophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0098847	sequence-specific single stranded DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1900673	olefin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1900674	olefin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000896	amylopectin metabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	8	168
IPR027417	P-loop_NTPase	2	179
IPR005225	Small_GTP-bd_dom	7	160

External Links

No external refs found!

SOLTUB.AGRIA.G00000033365

Expression Profile

Co-expression Networks

Functional Annotation