SOLTUB.AGRIA.G00000033564

Description : Serine/arginine-rich-splicing factor RS31

Gene families : OG_02_0002024 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000033564
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_46

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005681	spliceosomal complex	IEA	AHRD
CC	GO:0005730	nucleolus	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0007623	circadian rhythm	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009792	embryo development ending in birth or egg hatching	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010243	response to organonitrogen compound	IEA	AHRD
CC	GO:0010445	nuclear dicing body	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	IEA	AHRD
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0016604	nuclear body	None	Extended
CC	GO:0016607	nuclear speck	IEA	AHRD
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0030154	cell differentiation	IEA	AHRD
BP	GO:0031053	primary miRNA processing	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
CC	GO:0035061	interchromatin granule	IEA	AHRD
BP	GO:0035196	miRNA processing	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043484	regulation of RNA splicing	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048024	regulation of mRNA splicing, via spliceosome	IEA	AHRD
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050684	regulation of mRNA processing	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070918	small regulatory ncRNA processing	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1903311	regulation of mRNA metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0000408	EKC/KEOPS complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Predict GO terms from Neighborhoods
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000740	nuclear membrane fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0000741	karyogamy	IEP	Predict GO terms from Neighborhoods
CC	GO:0000791	euchromatin	IEP	Predict GO terms from Neighborhoods
MF	GO:0001056	RNA polymerase III activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001525	angiogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0001731	formation of translation preinitiation complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0002039	p53 binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0002183	cytoplasmic translational initiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003680	minor groove of adenine-thymine-rich DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003682	chromatin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004402	histone acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004407	histone deacetylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004520	endodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004536	deoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004596	peptide alpha-N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005654	nucleoplasm	IEP	Predict GO terms from Neighborhoods
CC	GO:0005662	DNA replication factor A complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005666	RNA polymerase III complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005796	Golgi lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0005850	eukaryotic translation initiation factor 2 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006259	DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006281	DNA repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	Predict GO terms from Neighborhoods
BP	GO:0006325	chromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006383	transcription by RNA polymerase III	IEP	Predict GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006450	regulation of translational fidelity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006457	protein folding	IEP	Predict GO terms from Neighborhoods
BP	GO:0006474	N-terminal protein amino acid acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0007349	cellularization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008080	N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008156	negative regulation of DNA replication	IEP	Predict GO terms from Neighborhoods
MF	GO:0008320	protein transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009292	horizontal gene transfer	IEP	Predict GO terms from Neighborhoods
BP	GO:0009294	DNA-mediated transformation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009304	tRNA transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0009558	embryo sac cellularization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010171	body morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010172	embryonic body morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010197	polar nucleus fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010198	synergid death	IEP	Predict GO terms from Neighborhoods
MF	GO:0010485	H4 histone acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010528	regulation of transposition	IEP	Predict GO terms from Neighborhoods
BP	GO:0010529	negative regulation of transposition	IEP	Predict GO terms from Neighborhoods
BP	GO:0010623	programmed cell death involved in cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010628	positive regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010954	positive regulation of protein processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0016282	eukaryotic 43S preinitiation complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018208	peptidyl-proline modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0019213	deacetylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030150	protein import into mitochondrial matrix	IEP	Predict GO terms from Neighborhoods
CC	GO:0031010	ISWI-type complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031297	replication fork processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0031304	intrinsic component of mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031305	integral component of mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031365	N-terminal protein amino acid modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0031369	translation initiation factor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031593	polyubiquitin modification-dependent protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032479	regulation of type I interferon production	IEP	Predict GO terms from Neighborhoods
BP	GO:0032481	positive regulation of type I interferon production	IEP	Predict GO terms from Neighborhoods
CC	GO:0032592	integral component of mitochondrial membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032648	regulation of interferon-beta production	IEP	Predict GO terms from Neighborhoods
BP	GO:0032728	positive regulation of interferon-beta production	IEP	Predict GO terms from Neighborhoods
CC	GO:0033290	eukaryotic 48S preinitiation complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0033558	protein lysine deacetylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0034450	ubiquitin-ubiquitin ligase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0034451	centriolar satellite	IEP	Predict GO terms from Neighborhoods
BP	GO:0035067	negative regulation of histone acetylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0035861	site of double-strand break	IEP	Predict GO terms from Neighborhoods
BP	GO:0036292	DNA rewinding	IEP	Predict GO terms from Neighborhoods
MF	GO:0036310	ATP-dependent DNA/DNA annealing activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042026	protein refolding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042797	tRNA transcription by RNA polymerase III	IEP	Predict GO terms from Neighborhoods
CC	GO:0043614	multi-eIF complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0043967	histone H4 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043968	histone H2A acetylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0043998	H2A histone acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045005	DNA-templated DNA replication maintenance of fidelity	IEP	Predict GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045903	positive regulation of translational fidelity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045910	negative regulation of DNA recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048478	replication fork protection	IEP	Predict GO terms from Neighborhoods
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051216	cartilage development	IEP	Predict GO terms from Neighborhoods
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051570	regulation of histone H3-K9 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051574	positive regulation of histone H3-K9 methylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070525	tRNA threonylcarbamoyladenosine metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0070530	K63-linked polyubiquitin modification-dependent protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070585	protein localization to mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0070613	regulation of protein processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0070993	translation preinitiation complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071013	catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0071763	nuclear membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	Predict GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0090734	site of DNA damage	IEP	Predict GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0098573	intrinsic component of mitochondrial membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098687	chromosomal region	IEP	Predict GO terms from Neighborhoods
BP	GO:0098781	ncRNA transcription	IEP	Predict GO terms from Neighborhoods
MF	GO:0140318	protein transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Predict GO terms from Neighborhoods
MF	GO:0140666	annealing activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900109	regulation of histone H3-K9 dimethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1900111	positive regulation of histone H3-K9 dimethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1900259	regulation of RNA-directed 5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900260	negative regulation of RNA-directed 5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901984	negative regulation of protein acetylation	IEP	Predict GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1903317	regulation of protein maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903319	positive regulation of protein maturation	IEP	Predict GO terms from Neighborhoods
MF	GO:1990189	peptide-serine-alpha-N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:1990814	DNA/DNA annealing activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1990823	response to leukemia inhibitory factor	IEP	Predict GO terms from Neighborhoods
BP	GO:1990830	cellular response to leukemia inhibitory factor	IEP	Predict GO terms from Neighborhoods
MF	GO:1990856	methionyl-initiator methionine tRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000104	negative regulation of DNA-templated DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:2000757	negative regulation of peptidyl-lysine acetylation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR035979	RBD_domain_sf	2	168
IPR000504	RRM_dom	4	60
IPR000504	RRM_dom	95	157

External Links

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SOLTUB.AGRIA.G00000033564

Expression Profile

Co-expression Networks

Functional Annotation