SOLTUB.AGRIA.G00000033633

Description : Eukaryotic translation initiation factor 1a

Gene families : OG_02_0000920 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000033633
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_375

Type	GO Term	Name	Evidence	Source
BP	GO:0001677	formation of translation initiation ternary complex	IEA	AHRD
BP	GO:0001731	formation of translation preinitiation complex	IEA	AHRD
BP	GO:0001732	formation of cytoplasmic translation initiation complex	IEA	AHRD
BP	GO:0002183	cytoplasmic translational initiation	None	Extended
BP	GO:0002188	translation reinitiation	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003725	double-stranded RNA binding	IEA	AHRD
MF	GO:0003743	translation initiation factor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006413	translational initiation	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0016282	eukaryotic 43S preinitiation complex	IEA	AHRD
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0019900	kinase binding	None	Extended
MF	GO:0019901	protein kinase binding	IEA	AHRD
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	ribonucleoprotein complex assembly	None	Extended
MF	GO:0031369	translation initiation factor binding	IEA	AHRD
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0033290	eukaryotic 48S preinitiation complex	IEA	AHRD
MF	GO:0043021	ribonucleoprotein complex binding	None	Extended
MF	GO:0043023	ribosomal large subunit binding	IEA	AHRD
MF	GO:0043024	ribosomal small subunit binding	IEA	AHRD
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
CC	GO:0070993	translation preinitiation complex	None	Extended
BP	GO:0071826	ribonucleoprotein complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009790	embryo development	IEP	Predict GO terms from Neighborhoods
BP	GO:0009793	embryo development ending in seed dormancy	IEP	Predict GO terms from Neighborhoods
MF	GO:0030246	carbohydrate binding	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006196	RNA-binding_domain_S1_IF1	32	93
IPR001253	TIF_eIF-1A	14	110
IPR012340	NA-bd_OB-fold	2	143

External Links

No external refs found!

SOLTUB.AGRIA.G00000033633

Expression Profile

Co-expression Networks

Functional Annotation