SOLTUB.AGRIA.G00000033979

Description : pumilio 12

Gene families : OG_02_0004120 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000033979
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_222

Type	GO Term	Name	Evidence	Source
CC	GO:0001401	SAM complex	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
BP	GO:0003008	system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005742	mitochondrial outer membrane translocase complex	None	Extended
BP	GO:0006417	regulation of translation	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006839	mitochondrial transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	IEA	AHRD
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007005	mitochondrion organization	None	Extended
BP	GO:0007006	mitochondrial membrane organization	None	Extended
BP	GO:0007008	outer mitochondrial membrane organization	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0007276	gamete generation	IEA	AHRD
BP	GO:0007610	behavior	None	Extended
BP	GO:0007611	learning or memory	None	Extended
BP	GO:0007613	memory	None	Extended
BP	GO:0007616	long-term memory	IEA	AHRD
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008258	head involution	IEA	AHRD
CC	GO:0009527	plastid outer membrane	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009658	chloroplast organization	IEA	AHRD
CC	GO:0009707	chloroplast outer membrane	IEA	AHRD
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009896	positive regulation of catabolic process	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009968	negative regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010648	negative regulation of cell communication	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0016021	integral component of membrane	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016441	post-transcriptional gene silencing	IEA	AHRD
BP	GO:0017148	negative regulation of translation	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
CC	GO:0019867	outer membrane	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023057	negative regulation of signaling	None	Extended
BP	GO:0030030	cell projection organization	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030534	adult behavior	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031329	regulation of cellular catabolic process	None	Extended
BP	GO:0031331	positive regulation of cellular catabolic process	None	Extended
CC	GO:0031594	neuromuscular junction	IEA	AHRD
CC	GO:0031968	organelle outer membrane	None	Extended
CC	GO:0031969	chloroplast membrane	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032989	cellular component morphogenesis	None	Extended
BP	GO:0032990	cell part morphogenesis	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0034249	negative regulation of cellular amide metabolic process	None	Extended
CC	GO:0035770	ribonucleoprotein granule	None	Extended
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	None	Extended
BP	GO:0042058	regulation of epidermal growth factor receptor signaling pathway	None	Extended
BP	GO:0042059	negative regulation of epidermal growth factor receptor signaling pathway	IEA	AHRD
CC	GO:0042170	plastid membrane	None	Extended
CC	GO:0043195	terminal bouton	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043487	regulation of RNA stability	None	Extended
BP	GO:0043488	regulation of mRNA stability	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0045040	protein insertion into mitochondrial outer membrane	IEA	AHRD
BP	GO:0045184	establishment of protein localization	None	Extended
CC	GO:0045202	synapse	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048149	behavioral response to ethanol	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048598	embryonic morphogenesis	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048812	neuron projection morphogenesis	None	Extended
BP	GO:0048813	dendrite morphogenesis	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048858	cell projection morphogenesis	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050779	RNA destabilization	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050877	nervous system process	None	Extended
BP	GO:0050890	cognition	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051204	protein insertion into mitochondrial membrane	None	Extended
BP	GO:0051205	protein insertion into membrane	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061013	regulation of mRNA catabolic process	None	Extended
BP	GO:0061014	positive regulation of mRNA catabolic process	None	Extended
BP	GO:0061024	membrane organization	None	Extended
BP	GO:0061157	mRNA destabilization	IEA	AHRD
CC	GO:0061174	type I terminal bouton	None	Extended
CC	GO:0061177	type Is terminal bouton	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070585	protein localization to mitochondrion	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
CC	GO:0071598	neuronal ribonucleoprotein granule	IEA	AHRD
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072655	establishment of protein localization to mitochondrion	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080050	regulation of seed development	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
BP	GO:0090151	establishment of protein localization to mitochondrial membrane	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098793	presynapse	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098798	mitochondrial protein-containing complex	None	Extended
CC	GO:0098799	outer mitochondrial membrane protein complex	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120039	plasma membrane bounded cell projection morphogenesis	None	Extended
BP	GO:1901184	regulation of ERBB signaling pathway	None	Extended
BP	GO:1901185	negative regulation of ERBB signaling pathway	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902039	negative regulation of seed dormancy process	IEA	AHRD
BP	GO:1903311	regulation of mRNA metabolic process	None	Extended
BP	GO:1903313	positive regulation of mRNA metabolic process	None	Extended
MF	GO:1905762	CCR4-NOT complex binding	IEA	AHRD
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000033	regulation of seed dormancy process	None	Extended
BP	GO:2000034	regulation of seed maturation	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2000242	negative regulation of reproductive process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0000302	response to reactive oxygen species	IEP	Predict GO terms from Neighborhoods
MF	GO:0004694	eukaryotic translation initiation factor 2alpha kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006446	regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009267	cellular response to starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009268	response to pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0010447	response to acidic pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0010998	regulation of translational initiation by eIF2 alpha phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031669	cellular response to nutrient levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0034198	cellular response to amino acid starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0034599	cellular response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0034614	cellular response to reactive oxygen species	IEP	Predict GO terms from Neighborhoods
BP	GO:0042542	response to hydrogen peroxide	IEP	Predict GO terms from Neighborhoods
BP	GO:0042594	response to starvation	IEP	Predict GO terms from Neighborhoods
CC	GO:0043005	neuron projection	IEP	Predict GO terms from Neighborhoods
BP	GO:0043555	regulation of translation in response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0043558	regulation of translational initiation in response to stress	IEP	Predict GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048468	cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0062197	cellular response to chemical stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0070301	cellular response to hydrogen peroxide	IEP	Predict GO terms from Neighborhoods
BP	GO:0071407	cellular response to organic cyclic compound	IEP	Predict GO terms from Neighborhoods
BP	GO:0071417	cellular response to organonitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:0071467	cellular response to pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0071468	cellular response to acidic pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0072755	cellular response to benomyl	IEP	Predict GO terms from Neighborhoods
MF	GO:0106310	protein serine kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901561	response to benomyl	IEP	Predict GO terms from Neighborhoods
BP	GO:1901699	cellular response to nitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:1990451	cellular stress response to acidic pH	IEP	Predict GO terms from Neighborhoods
BP	GO:1990928	response to amino acid starvation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR016024	ARM-type_fold	25	173
IPR001313	Pumilio_RNA-bd_rpt	107	141
IPR001313	Pumilio_RNA-bd_rpt	71	88
IPR001313	Pumilio_RNA-bd_rpt	35	69
IPR001313	Pumilio_RNA-bd_rpt	151	165

External Links

No external refs found!

SOLTUB.AGRIA.G00000033979

Expression Profile

Co-expression Networks

Functional Annotation