SOLTUB.AGRIA.G00000035092

Description : RAB GTPase homolog C2B

Gene families : OG_02_0028514 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000035092
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_25

Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEA	AHRD
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0001654	eye development	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	None	Extended
MF	GO:0003925	G protein activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005525	GTP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005773	vacuole	IEA	AHRD
CC	GO:0005777	peroxisome	IEA	AHRD
CC	GO:0005789	endoplasmic reticulum membrane	IEA	AHRD
CC	GO:0005811	lipid droplet	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	AHRD
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEA	AHRD
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0006914	autophagy	IEA	AHRD
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007029	endoplasmic reticulum organization	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007264	small GTPase mediated signal transduction	IEA	AHRD
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0007420	brain development	IEA	AHRD
BP	GO:0007423	sensory organ development	None	Extended
MF	GO:0008092	cytoskeletal protein binding	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009792	embryo development ending in birth or egg hatching	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0010008	endosome membrane	IEA	AHRD
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
CC	GO:0012506	vesicle membrane	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
CC	GO:0016324	apical plasma membrane	IEA	AHRD
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017022	myosin binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0019003	GDP binding	IEA	AHRD
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030659	cytoplasmic vesicle membrane	None	Extended
CC	GO:0030667	secretory granule membrane	IEA	AHRD
MF	GO:0030742	GTP-dependent protein binding	IEA	AHRD
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
MF	GO:0032029	myosin tail binding	None	Extended
MF	GO:0032036	myosin heavy chain binding	None	Extended
BP	GO:0032456	endocytic recycling	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
CC	GO:0032588	trans-Golgi network membrane	IEA	AHRD
BP	GO:0033036	macromolecule localization	None	Extended
CC	GO:0034045	phagophore assembly site membrane	IEA	AHRD
BP	GO:0034389	lipid droplet organization	IEA	AHRD
BP	GO:0035556	intracellular signal transduction	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0042579	microbody	None	Extended
BP	GO:0043009	chordate embryonic development	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
CC	GO:0045202	synapse	IEA	AHRD
BP	GO:0046686	response to cadmium ion	IEA	AHRD
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
CC	GO:0048471	perinuclear region of cytoplasm	IEA	AHRD
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	IEA	AHRD
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0061919	process utilizing autophagic mechanism	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0071782	endoplasmic reticulum tubular network	IEA	AHRD
BP	GO:0071786	endoplasmic reticulum tubular network organization	IEA	AHRD
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0080115	myosin XI tail binding	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098590	plasma membrane region	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0098827	endoplasmic reticulum subcompartment	None	Extended
BP	GO:0098876	vesicle-mediated transport to the plasma membrane	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000086	G2/M transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Predict GO terms from Neighborhoods
CC	GO:0000228	nuclear chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0000935	division septum	IEP	Predict GO terms from Neighborhoods
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0001931	uropod	IEP	Predict GO terms from Neighborhoods
BP	GO:0002090	regulation of receptor internalization	IEP	Predict GO terms from Neighborhoods
MF	GO:0003785	actin monomer binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Predict GO terms from Neighborhoods
MF	GO:0004565	beta-galactosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004866	endopeptidase inhibitor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004867	serine-type endopeptidase inhibitor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005576	extracellular region	IEP	Predict GO terms from Neighborhoods
CC	GO:0005618	cell wall	IEP	Predict GO terms from Neighborhoods
CC	GO:0005774	vacuolar membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0005975	carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006898	receptor-mediated endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0007097	nuclear migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0007155	cell adhesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007164	establishment of tissue polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:0007409	axonogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0008810	cellulase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009057	macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009251	glucan catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009505	plant-type cell wall	IEP	Predict GO terms from Neighborhoods
BP	GO:0009664	plant-type cell wall organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009827	plant-type cell wall modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009828	plant-type cell wall loosening	IEP	Predict GO terms from Neighborhoods
BP	GO:0010047	fruit dehiscence	IEP	Predict GO terms from Neighborhoods
BP	GO:0010252	auxin homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010466	negative regulation of peptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010951	negative regulation of endopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010970	transport along microtubule	IEP	Predict GO terms from Neighborhoods
MF	GO:0015925	galactosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016049	cell growth	IEP	Predict GO terms from Neighborhoods
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016308	1-phosphatidylinositol-4-phosphate 5-kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0018458	isopiperitenol dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0018459	carveol dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0022402	cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030243	cellulose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030245	cellulose catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0030246	carbohydrate binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0030312	external encapsulating structure	IEP	Predict GO terms from Neighborhoods
MF	GO:0030414	peptidase inhibitor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0030428	cell septum	IEP	Predict GO terms from Neighborhoods
BP	GO:0030473	nuclear migration along microtubule	IEP	Predict GO terms from Neighborhoods
BP	GO:0030705	cytoskeleton-dependent intracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0030989	dynein-driven meiotic oscillatory nuclear movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0031137	regulation of conjugation with cellular fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0031138	negative regulation of conjugation with cellular fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031524	menthol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031525	menthol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032147	activation of protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032878	regulation of establishment or maintenance of cell polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032990	cell part morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0033045	regulation of sister chromatid segregation	IEP	Predict GO terms from Neighborhoods
CC	GO:0033620	Mei2 nuclear dot complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0033674	positive regulation of kinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0034064	Tor2-Mei2-Ste11 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0034109	homotypic cell-cell adhesion	IEP	Predict GO terms from Neighborhoods
MF	GO:0036002	pre-mRNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0036477	somatodendritic compartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0040007	growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0040020	regulation of meiotic nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0042545	cell wall modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0043327	chemotaxis to cAMP	IEP	Predict GO terms from Neighborhoods
BP	GO:0044247	cellular polysaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044770	cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0044772	mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0044839	cell cycle G2/M phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0045836	positive regulation of meiotic nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0045860	positive regulation of protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0046854	phosphatidylinositol phosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0048046	apoplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0048259	regulation of receptor-mediated endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048588	developmental cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0048589	developmental growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0048766	root hair initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048767	root hair elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048768	root hair cell tip growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0048812	neuron projection morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048858	cell projection morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050830	defense response to Gram-positive bacterium	IEP	Predict GO terms from Neighborhoods
MF	GO:0051015	actin filament binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051275	beta-glucan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051445	regulation of meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0051446	positive regulation of meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0051647	nucleus localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051785	positive regulation of nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0051983	regulation of chromosome segregation	IEP	Predict GO terms from Neighborhoods
MF	GO:0052811	1-phosphatidylinositol-3-phosphate 4-kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052812	phosphatidylinositol-3,4-bisphosphate 5-kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052813	phosphatidylinositol bisphosphate kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0061135	endopeptidase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070527	platelet aggregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071555	cell wall organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0071704	organic substance metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072384	organelle transport along microtubule	IEP	Predict GO terms from Neighborhoods
BP	GO:0072583	clathrin-dependent endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0080167	response to karrikin	IEP	Predict GO terms from Neighborhoods
CC	GO:0097060	synaptic membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0098609	cell-cell adhesion	IEP	Predict GO terms from Neighborhoods
CC	GO:0098835	presynaptic endocytic zone membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0099111	microtubule-based transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0099149	regulation of postsynaptic neurotransmitter receptor internalization	IEP	Predict GO terms from Neighborhoods
BP	GO:0110046	signal transduction involved in cell cycle switching, mitotic to meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0120039	plasma membrane bounded cell projection morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0140311	protein sequestering activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140313	molecular sequestering activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0140538	negative regulation of conjugation with zygote	IEP	Predict GO terms from Neighborhoods
BP	GO:1900242	regulation of synaptic vesicle endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:1901993	regulation of meiotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901995	positive regulation of meiotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1902099	regulation of metaphase/anaphase transition of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:1902101	positive regulation of metaphase/anaphase transition of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:1902102	regulation of metaphase/anaphase transition of meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:1902104	positive regulation of metaphase/anaphase transition of meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:1902633	1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902635	1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902652	secondary alcohol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902653	secondary alcohol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903421	regulation of synaptic vesicle recycling	IEP	Predict GO terms from Neighborhoods
BP	GO:1905132	regulation of meiotic chromosome separation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905134	positive regulation of meiotic chromosome separation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905189	regulation of metaphase/anaphase transition of meiosis II	IEP	Predict GO terms from Neighborhoods
BP	GO:1905191	positive regulation of metaphase/anaphase transition of meiosis II	IEP	Predict GO terms from Neighborhoods
BP	GO:1905818	regulation of chromosome separation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905820	positive regulation of chromosome separation	IEP	Predict GO terms from Neighborhoods
BP	GO:1990059	fruit valve development	IEP	Predict GO terms from Neighborhoods
BP	GO:2000114	regulation of establishment of cell polarity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR027417	P-loop_NTPase	12	107
IPR001806	Small_GTPase	18	106

External Links

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SOLTUB.AGRIA.G00000035092

Expression Profile

Co-expression Networks

Functional Annotation