SOLTUB.AGRIA.G00000035425

Description : Pentatricopeptide repeat-containing protein At2g28050

Gene families : OG_02_0023725 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000035425
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_137

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0000963	mitochondrial RNA processing	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010467	gene expression	None	Extended
CC	GO:0012505	endomembrane system	IEA	AHRD
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090615	mitochondrial mRNA processing	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140053	mitochondrial gene expression	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000820	regulation of glutamine family amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	IEP	Predict GO terms from Neighborhoods
MF	GO:0000987	cis-regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004084	branched-chain-amino-acid transaminase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006521	regulation of cellular amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006534	cysteine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006549	isoleucine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006551	leucine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006555	methionine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006573	valine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006868	glutamine transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0008483	transaminase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0009000	selenocysteine lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009069	serine family amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009086	methionine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009097	isoleucine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009098	leucine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009099	valine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009567	double fertilization forming a zygote and endosperm	IEP	Predict GO terms from Neighborhoods
MF	GO:0010326	methionine-oxo-acid transaminase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010585	glutamine secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0015804	neutral amino acid transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016783	sulfurtransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016846	carbon-sulfur lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019048	modulation by virus of host process	IEP	Predict GO terms from Neighborhoods
MF	GO:0031071	cysteine desulfurase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032890	regulation of organic acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0033238	regulation of cellular amine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033321	homomethionine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033506	glucosinolate biosynthetic process from homomethionine	IEP	Predict GO terms from Neighborhoods
BP	GO:0035821	modulation of process of another organism	IEP	Predict GO terms from Neighborhoods
BP	GO:0043102	amino acid salvage	IEP	Predict GO terms from Neighborhoods
BP	GO:0044003	modulation by symbiont of host process	IEP	Predict GO terms from Neighborhoods
MF	GO:0050048	L-leucine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051952	regulation of amine transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051955	regulation of amino acid transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0052654	L-leucine transaminase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052655	L-valine transaminase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052656	L-isoleucine transaminase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0071265	L-methionine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071267	L-methionine salvage	IEP	Predict GO terms from Neighborhoods
BP	GO:0080143	regulation of amino acid export	IEP	Predict GO terms from Neighborhoods
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903789	regulation of amino acid transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:2000033	regulation of seed dormancy process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000034	regulation of seed maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000214	regulation of proline metabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	229	262
IPR002885	Pentatricopeptide_repeat	334	367
IPR002885	Pentatricopeptide_repeat	369	399
IPR002885	Pentatricopeptide_repeat	124	156
IPR002885	Pentatricopeptide_repeat	403	437
IPR002885	Pentatricopeptide_repeat	194	227
IPR002885	Pentatricopeptide_repeat	264	296
IPR002885	Pentatricopeptide_repeat	158	188
IPR002885	Pentatricopeptide_repeat	299	332
IPR002885	Pentatricopeptide_repeat	438	472
IPR002885	Pentatricopeptide_repeat	249	306
IPR002885	Pentatricopeptide_repeat	89	118
IPR002885	Pentatricopeptide_repeat	22	45
IPR002885	Pentatricopeptide_repeat	330	379
IPR002885	Pentatricopeptide_repeat	401	449
IPR002885	Pentatricopeptide_repeat	193	237
IPR002885	Pentatricopeptide_repeat	120	169

External Links

No external refs found!

SOLTUB.AGRIA.G00000035425

Expression Profile

Co-expression Networks

Functional Annotation