SOLTUB.AGRIA.G00000036372

Description : Pentatricopeptide repeat-containing family protein

Gene families : OG_02_0017092 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000036372
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_36

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	AHRD
BP	GO:0006412	translation	IEA	AHRD
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010467	gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	IEA	AHRD
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0140053	mitochondrial gene expression	IEA	AHRD
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000001	mitochondrion inheritance	IEP	Predict GO terms from Neighborhoods
CC	GO:0000123	histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000280	nuclear division	IEP	Predict GO terms from Neighborhoods
MF	GO:0000339	RNA cap binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000340	RNA 7-methylguanosine cap binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Predict GO terms from Neighborhoods
CC	GO:0000775	chromosome, centromeric region	IEP	Predict GO terms from Neighborhoods
CC	GO:0000791	euchromatin	IEP	Predict GO terms from Neighborhoods
CC	GO:0000932	P-body	IEP	Predict GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003730	mRNA 3'-UTR binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0006111	regulation of gluconeogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006275	regulation of DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006304	DNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006446	regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007140	male meiotic nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0008097	5S rRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008098	5S rRNA primary transcript binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008187	poly-pyrimidine tract binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008190	eukaryotic initiation factor 4E binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008266	poly(U) RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Predict GO terms from Neighborhoods
MF	GO:0008494	translation activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009733	response to auxin	IEP	Predict GO terms from Neighborhoods
BP	GO:0009889	regulation of biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009892	negative regulation of metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010014	meristem initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010071	root meristem specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0010072	primary shoot apical meristem specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0010212	response to ionizing radiation	IEP	Predict GO terms from Neighborhoods
CC	GO:0010494	cytoplasmic stress granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0010508	positive regulation of autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010712	regulation of collagen metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010714	positive regulation of collagen metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010821	regulation of mitochondrion organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010822	positive regulation of mitochondrion organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010906	regulation of glucose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016073	snRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016239	positive regulation of macroautophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0016241	regulation of macroautophagy	IEP	Predict GO terms from Neighborhoods
MF	GO:0017022	myosin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0017069	snRNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	IEP	Predict GO terms from Neighborhoods
CC	GO:0031248	protein acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031312	extrinsic component of organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031315	extrinsic component of mitochondrial outer membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0031369	translation initiation factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031399	regulation of protein modification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031929	TOR signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0031981	nuclear lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032897	negative regulation of viral transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0032965	regulation of collagen biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032967	positive regulation of collagen biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0034046	poly(G) binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0034708	methyltransferase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0035097	histone methyltransferase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0035613	RNA stem-loop binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0035770	ribonucleoprotein granule	IEP	Predict GO terms from Neighborhoods
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0038202	TORC1 signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0040031	snRNA modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0043024	ribosomal small subunit binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043489	RNA stabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0043967	histone H4 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044093	positive regulation of molecular function	IEP	Predict GO terms from Neighborhoods
CC	GO:0044665	MLL1/2 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0045069	regulation of viral genome replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0045070	positive regulation of viral genome replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0045472	response to ether	IEP	Predict GO terms from Neighborhoods
BP	GO:0045740	positive regulation of DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0045947	negative regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045948	positive regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046782	regulation of viral transcription	IEP	Predict GO terms from Neighborhoods
MF	GO:0048027	mRNA 5'-UTR binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0048255	mRNA stabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0048308	organelle inheritance	IEP	Predict GO terms from Neighborhoods
BP	GO:0048311	mitochondrion distribution	IEP	Predict GO terms from Neighborhoods
BP	GO:0048524	positive regulation of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048525	negative regulation of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050792	regulation of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051054	positive regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051099	positive regulation of binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051569	regulation of histone H3-K4 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051646	mitochondrion localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0060147	regulation of post-transcriptional gene silencing	IEP	Predict GO terms from Neighborhoods
BP	GO:0060148	positive regulation of post-transcriptional gene silencing	IEP	Predict GO terms from Neighborhoods
BP	GO:0060966	regulation of gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0070717	poly-purine tract binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070887	cellular response to chemical stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071362	cellular response to ether	IEP	Predict GO terms from Neighborhoods
BP	GO:0071365	cellular response to auxin stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071495	cellular response to endogenous stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0072752	cellular response to rapamycin	IEP	Predict GO terms from Neighborhoods
BP	GO:0090296	regulation of mitochondrial DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0090297	positive regulation of mitochondrial DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0090329	regulation of DNA-templated DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0090421	embryonic meristem initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090615	mitochondrial mRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0099080	supramolecular complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0106349	snRNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0110154	RNA decapping	IEP	Predict GO terms from Neighborhoods
BP	GO:0110156	methylguanosine-cap decapping	IEP	Predict GO terms from Neighborhoods
CC	GO:0120114	Sm-like protein family complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0120259	7SK snRNP	IEP	Predict GO terms from Neighborhoods
BP	GO:0140013	meiotic nuclear division	IEP	Predict GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1900368	regulation of post-transcriptional gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:1900370	positive regulation of post-transcriptional gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:1901355	response to rapamycin	IEP	Predict GO terms from Neighborhoods
BP	GO:1901654	response to ketone	IEP	Predict GO terms from Neighborhoods
BP	GO:1901655	cellular response to ketone	IEP	Predict GO terms from Neighborhoods
BP	GO:1901858	regulation of mitochondrial DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901860	positive regulation of mitochondrial DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902369	negative regulation of RNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902373	negative regulation of mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902415	regulation of mRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1902416	positive regulation of mRNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:1902493	acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1902562	H4 histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1903312	negative regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903900	regulation of viral life cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:1905214	regulation of RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1905216	positive regulation of RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1990437	snRNA 2'-O-methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1990438	U6 2'-O-snRNA methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:1990825	sequence-specific mRNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1990928	response to amino acid starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000105	positive regulation of DNA-templated DNA replication	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	142	164
IPR002885	Pentatricopeptide_repeat	180	206
IPR002885	Pentatricopeptide_repeat	257	284
IPR002885	Pentatricopeptide_repeat	328	362
IPR002885	Pentatricopeptide_repeat	363	393
IPR002885	Pentatricopeptide_repeat	681	713
IPR002885	Pentatricopeptide_repeat	292	327
IPR002885	Pentatricopeptide_repeat	435	468
IPR002885	Pentatricopeptide_repeat	645	678
IPR002885	Pentatricopeptide_repeat	750	783
IPR002885	Pentatricopeptide_repeat	715	749
IPR002885	Pentatricopeptide_repeat	400	427
IPR002885	Pentatricopeptide_repeat	289	339
IPR002885	Pentatricopeptide_repeat	360	410
IPR002885	Pentatricopeptide_repeat	435	476
IPR002885	Pentatricopeptide_repeat	644	690
IPR002885	Pentatricopeptide_repeat	713	752

External Links

No external refs found!

SOLTUB.AGRIA.G00000036372

Expression Profile

Co-expression Networks

Functional Annotation