| CC | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000380 | alternative mRNA splicing, via spliceosome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000578 | embryonic axis specification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001578 | microtubule bundle formation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0002009 | morphogenesis of an epithelium | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0002944 | cyclin K-CDK12 complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0002945 | cyclin K-CDK13 complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0003002 | regionalization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0003006 | developmental process involved in reproduction | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003779 | actin binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003993 | acid phosphatase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004672 | protein kinase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004674 | protein serine/threonine kinase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004675 | transmembrane receptor protein serine/threonine kinase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004693 | cyclin-dependent protein serine/threonine kinase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005488 | binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005515 | protein binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005618 | cell wall | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005819 | spindle | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005886 | plasma membrane | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005911 | cell-cell junction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006468 | protein phosphorylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006793 | phosphorus metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007015 | actin filament organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007088 | regulation of mitotic nuclear division | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007167 | enzyme-linked receptor protein signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007178 | transmembrane receptor protein serine/threonine kinase signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007389 | pattern specification process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0008023 | transcription elongation factor complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0008024 | cyclin/CDK positive transcription elongation factor complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008064 | regulation of actin polymerization or depolymerization | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008092 | cytoskeletal protein binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008284 | positive regulation of cell population proliferation | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008353 | RNA polymerase II CTD heptapeptide repeat kinase activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009506 | plasmodesma | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0009524 | phragmoplast | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009607 | response to biotic stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009647 | skotomorphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009653 | anatomical structure morphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009720 | detection of hormone stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009726 | detection of endogenous stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009729 | detection of brassinosteroid stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009742 | brassinosteroid mediated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009798 | axis specification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009880 | embryonic pattern specification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009888 | tissue development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009942 | longitudinal axis specification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009943 | adaxial/abaxial axis specification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009947 | centrolateral axis specification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009960 | endosperm development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010014 | meristem initiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010051 | xylem and phloem pattern formation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010058 | regulation of atrichoblast fate specification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010059 | positive regulation of atrichoblast fate specification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010061 | regulation of trichoblast fate specification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010063 | positive regulation of trichoblast fate specification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010065 | primary meristem tissue development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010067 | procambium histogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010071 | root meristem specification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010074 | maintenance of meristem identity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010078 | maintenance of root meristem identity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010233 | phloem transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010305 | leaf vascular tissue pattern formation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010453 | regulation of cell fate commitment | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010455 | positive regulation of cell fate commitment | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010482 | regulation of epidermal cell division | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010496 | intercellular transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010497 | plasmodesmata-mediated intercellular transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010639 | negative regulation of organelle organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010654 | apical cell fate commitment | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010865 | stipule development | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016301 | kinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016310 | phosphorylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016579 | protein deubiquitination | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016926 | protein desumoylation | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019827 | stem cell population maintenance | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0019900 | kinase binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0019901 | protein kinase binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0019908 | nuclear cyclin-dependent protein kinase holoenzyme complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0022414 | reproductive process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030054 | cell junction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030097 | hemopoiesis | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030312 | external encapsulating structure | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030332 | cyclin binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030832 | regulation of actin filament length | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030833 | regulation of actin filament polymerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030834 | regulation of actin filament depolymerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030835 | negative regulation of actin filament depolymerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030837 | negative regulation of actin filament polymerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031333 | negative regulation of protein-containing complex assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032271 | regulation of protein polymerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032272 | negative regulation of protein polymerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032502 | developmental process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032535 | regulation of cellular component size | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032784 | regulation of DNA-templated transcription elongation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032786 | positive regulation of DNA-templated transcription, elongation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0032806 | carboxy-terminal domain protein kinase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032956 | regulation of actin cytoskeleton organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032968 | positive regulation of transcription elongation by RNA polymerase II | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032970 | regulation of actin filament-based process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033043 | regulation of organelle organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034243 | regulation of transcription elongation by RNA polymerase II | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0036211 | protein modification process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042127 | regulation of cell population proliferation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042659 | regulation of cell fate specification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042660 | positive regulation of cell fate specification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043207 | response to external biotic stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043242 | negative regulation of protein-containing complex disassembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043244 | regulation of protein-containing complex disassembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043254 | regulation of protein-containing complex assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043405 | regulation of MAP kinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043412 | macromolecule modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044087 | regulation of cellular component biogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044419 | biological process involved in interspecies interaction between organisms | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0044877 | protein-containing complex binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045010 | actin nucleation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045165 | cell fate commitment | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045595 | regulation of cell differentiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046777 | protein autophosphorylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048317 | seed morphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048366 | leaf development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048440 | carpel development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048481 | plant ovule development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048508 | embryonic meristem development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048523 | negative regulation of cellular process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048534 | hematopoietic or lymphoid organ development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048658 | anther wall tapetum development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048827 | phyllome development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048856 | anatomical structure development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048859 | formation of anatomical boundary | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050789 | regulation of biological process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050792 | regulation of viral process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050793 | regulation of developmental process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050794 | regulation of cellular process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0051015 | actin filament binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051016 | barbed-end actin filament capping | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051128 | regulation of cellular component organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051129 | negative regulation of cellular component organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051174 | regulation of phosphorus metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051493 | regulation of cytoskeleton organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051494 | negative regulation of cytoskeleton organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051693 | actin filament capping | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051707 | response to other organism | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0055062 | phosphate ion homeostasis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060026 | convergent extension | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060027 | convergent extension involved in gastrulation | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0061578 | Lys63-specific deubiquitinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0065008 | regulation of biological quality | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0070161 | anchoring junction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070646 | protein modification by small protein removal | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0070691 | P-TEFb complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0070692 | CTDK-1 complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0070693 | P-TEFb-cap methyltransferase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070816 | phosphorylation of RNA polymerase II C-terminal domain | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0072506 | trivalent inorganic anion homeostasis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0080166 | stomium development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090066 | regulation of anatomical structure size | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090421 | embryonic meristem initiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090451 | cotyledon boundary formation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090506 | axillary shoot meristem initiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090691 | formation of plant organ boundary | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090698 | post-embryonic plant morphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0097435 | supramolecular fiber organization | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0097472 | cyclin-dependent protein kinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0098727 | maintenance of cell number | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0099402 | plant organ development | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0101005 | deubiquitinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0110053 | regulation of actin filament organization | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900459 | positive regulation of brassinosteroid mediated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901879 | regulation of protein depolymerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901880 | negative regulation of protein depolymerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902288 | regulation of defense response to oomycetes | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902290 | positive regulation of defense response to oomycetes | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902459 | positive regulation of stem cell population maintenance | IEP | Predict GO terms from Neighborhoods |
| CC | GO:1902554 | serine/threonine protein kinase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902903 | regulation of supramolecular fiber organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902904 | negative regulation of supramolecular fiber organization | IEP | Predict GO terms from Neighborhoods |
| CC | GO:1902911 | protein kinase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903888 | regulation of plant epidermal cell differentiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903890 | positive regulation of plant epidermal cell differentiation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:1904813 | ficolin-1-rich granule lumen | IEP | Predict GO terms from Neighborhoods |
| MF | GO:1990380 | Lys48-specific deubiquitinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000031 | regulation of salicylic acid mediated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000036 | regulation of stem cell population maintenance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000067 | regulation of root morphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000736 | regulation of stem cell differentiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000737 | negative regulation of stem cell differentiation | IEP | Predict GO terms from Neighborhoods |