SOLTUB.AGRIA.G00000036829

Description : Eukaryotic peptide chain release factor subunit 1-1

Gene families : OG_02_0000589 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000036829
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_183

Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEA	AHRD
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	None	Extended
BP	GO:0002184	cytoplasmic translational termination	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	None	Extended
MF	GO:0003747	translation release factor activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006415	translational termination	None	Extended
BP	GO:0006417	regulation of translation	None	Extended
BP	GO:0006449	regulation of translational termination	IEA	AHRD
BP	GO:0006479	protein methylation	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008079	translation termination factor activity	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0016149	translation release factor activity, codon specific	IEA	AHRD
CC	GO:0018444	translation release factor complex	IEA	AHRD
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022411	cellular component disassembly	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032984	protein-containing complex disassembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040008	regulation of growth	IEA	AHRD
MF	GO:0043021	ribonucleoprotein complex binding	None	Extended
MF	GO:0043022	ribosome binding	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043244	regulation of protein-containing complex disassembly	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
MF	GO:1990825	sequence-specific mRNA binding	IEA	AHRD
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0000822	inositol hexakisphosphate binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003724	RNA helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005797	Golgi medial cisterna	IEP	Predict GO terms from Neighborhoods
CC	GO:0005802	trans-Golgi network	IEP	Predict GO terms from Neighborhoods
CC	GO:0005844	polysome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005934	cellular bud tip	IEP	Predict GO terms from Neighborhoods
BP	GO:0006405	RNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006406	mRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006409	tRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006913	nucleocytoplasmic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007281	germ cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007286	spermatid development	IEP	Predict GO terms from Neighborhoods
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	Predict GO terms from Neighborhoods
CC	GO:0010494	cytoplasmic stress granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0015931	nucleobase-containing compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
CC	GO:0030427	site of polarized growth	IEP	Predict GO terms from Neighborhoods
CC	GO:0031985	Golgi cisterna	IEP	Predict GO terms from Neighborhoods
CC	GO:0033391	chromatoid body	IEP	Predict GO terms from Neighborhoods
CC	GO:0035770	ribonucleoprotein granule	IEP	Predict GO terms from Neighborhoods
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0042546	cell wall biogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0043178	alcohol binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0044614	nuclear pore cytoplasmic filaments	IEP	Predict GO terms from Neighborhoods
BP	GO:0048468	cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048869	cellular developmental process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050657	nucleic acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0050658	RNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051028	mRNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051031	tRNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051168	nuclear export	IEP	Predict GO terms from Neighborhoods
BP	GO:0051169	nuclear transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051236	establishment of RNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0080147	root hair cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0097064	ncRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
CC	GO:0098791	Golgi apparatus subcompartment	IEP	Predict GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR005142	eRF1_3	281	418
IPR029064	L30e-like	278	420
IPR004403	Peptide_chain-rel_eRF1/aRF1	12	417
IPR005141	eRF1_2	144	277
IPR005140	eRF1_1_Pelota	17	138
IPR024049	eRF1_1_sf	6	140

External Links

No external refs found!

SOLTUB.AGRIA.G00000036829

Expression Profile

Co-expression Networks

Functional Annotation