SOLTUB.AGRIA.G00000037195

Description : 5'-3' exonuclease

Gene families : OG_02_0005070 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000037195
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_222

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	IEA	AHRD
MF	GO:0005488	binding	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	IEA	AHRD
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	IEA	AHRD
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0000455	enzyme-directed rRNA pseudouridine synthesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0001522	pseudouridine synthesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006814	sodium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006848	pyruvate transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0008028	monocarboxylic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0009982	pseudouridine synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015297	antiporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015718	monocarboxylic acid transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016866	intramolecular transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0031118	rRNA pseudouridine synthesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0031969	chloroplast membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0046942	carboxylic acid transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050833	pyruvate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901475	pyruvate transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903825	organic acid transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR020045	DNA_polI_H3TH	257	342
IPR036279	5-3_exonuclease_C_sf	257	349
IPR029060	PIN-like_dom_sf	82	248
IPR020046	5-3_exonucl_a-hlix_arch_N	102	228

External Links

No external refs found!

SOLTUB.AGRIA.G00000037195

Expression Profile

Co-expression Networks

Functional Annotation