SOLTUB.AGRIA.G00000037833

Description : Pentatricopeptide repeat-containing protein

Gene families : OG_02_0002303 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000037833
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_222

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	AHRD
BP	GO:0006412	translation	None	Extended
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009658	chloroplast organization	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010019	chloroplast-nucleus signaling pathway	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031930	mitochondria-nucleus signaling pathway	IEA	AHRD
BP	GO:0032543	mitochondrial translation	IEA	AHRD
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1900865	chloroplast RNA modification	IEA	AHRD
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003724	RNA helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004888	transmembrane signaling receptor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005777	peroxisome	IEP	Predict GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006814	sodium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006848	pyruvate transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006950	response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0006968	cellular defense response	IEP	Predict GO terms from Neighborhoods
MF	GO:0008028	monocarboxylic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0008509	anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009620	response to fungus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009786	regulation of asymmetric cell division	IEP	Predict GO terms from Neighborhoods
CC	GO:0009986	cell surface	IEP	Predict GO terms from Neighborhoods
CC	GO:0010008	endosome membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0010016	shoot system morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010311	lateral root formation	IEP	Predict GO terms from Neighborhoods
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015297	antiporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015711	organic anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015718	monocarboxylic acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015849	organic acid transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0016021	integral component of membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0016324	apical plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0019199	transmembrane receptor protein kinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0030139	endocytic vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030427	site of polarized growth	IEP	Predict GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031224	intrinsic component of membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031902	late endosome membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031969	chloroplast membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0032585	multivesicular body membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0035838	growing cell tip	IEP	Predict GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042255	ribosome assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0046942	carboxylic acid transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048439	flower morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048829	root cap development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050832	defense response to fungus	IEP	Predict GO terms from Neighborhoods
MF	GO:0050833	pyruvate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0051286	cell tip	IEP	Predict GO terms from Neighborhoods
BP	GO:0051302	regulation of cell division	IEP	Predict GO terms from Neighborhoods
CC	GO:0060187	cell pole	IEP	Predict GO terms from Neighborhoods
BP	GO:0070925	organelle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0071369	cellular response to ethylene stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071395	cellular response to jasmonic acid stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071396	cellular response to lipid	IEP	Predict GO terms from Neighborhoods
BP	GO:0071398	cellular response to fatty acid	IEP	Predict GO terms from Neighborhoods
BP	GO:0071407	cellular response to organic cyclic compound	IEP	Predict GO terms from Neighborhoods
BP	GO:0071446	cellular response to salicylic acid stimulus	IEP	Predict GO terms from Neighborhoods
CC	GO:0090404	pollen tube tip	IEP	Predict GO terms from Neighborhoods
BP	GO:0090627	plant epidermal cell differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0098542	defense response to other organism	IEP	Predict GO terms from Neighborhoods
BP	GO:0098656	anion transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0106310	protein serine kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1900457	regulation of brassinosteroid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1900459	positive regulation of brassinosteroid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1901475	pyruvate transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903825	organic acid transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1905393	plant organ formation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	339	381
IPR002885	Pentatricopeptide_repeat	403	451
IPR002885	Pentatricopeptide_repeat	441	472
IPR002885	Pentatricopeptide_repeat	370	394
IPR002885	Pentatricopeptide_repeat	299	329
IPR002885	Pentatricopeptide_repeat	406	439
IPR002885	Pentatricopeptide_repeat	229	263
IPR002885	Pentatricopeptide_repeat	159	192
IPR002885	Pentatricopeptide_repeat	265	297
IPR002885	Pentatricopeptide_repeat	336	362
IPR033443	PPR_long	172	324

External Links

No external refs found!

SOLTUB.AGRIA.G00000037833

Expression Profile

Co-expression Networks

Functional Annotation