SOLTUB.AGRIA.G00000037980

Description : Ribosome production factor 1

Gene families : OG_02_0005086 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000037980
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_106

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	AHRD
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	AHRD
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0030686	90S preribosome	IEA	AHRD
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0042273	ribosomal large subunit biogenesis	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0000105	histidine biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0001046	core promoter sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0002244	hematopoietic progenitor cell differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004400	histidinol-phosphate transaminase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004694	eukaryotic translation initiation factor 2alpha kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005242	inward rectifier potassium channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005249	voltage-gated potassium channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005267	potassium channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006479	protein methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006547	histidine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007135	meiosis II	IEP	Predict GO terms from Neighborhoods
MF	GO:0008110	L-histidine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008213	protein alkylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008483	transaminase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009508	plastid chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0009695	jasmonic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010035	response to inorganic substance	IEP	Predict GO terms from Neighborhoods
BP	GO:0010118	stomatal movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0010447	response to acidic pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0010452	histone H3-K36 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010998	regulation of translational initiation by eIF2 alpha phosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0015276	ligand-gated ion channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016571	histone methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0016629	12-oxophytodienoate reductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Predict GO terms from Neighborhoods
BP	GO:0018022	peptidyl-lysine methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018205	peptidyl-lysine modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0022834	ligand-gated channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022843	voltage-gated cation channel activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0032116	SMC loading complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0032205	negative regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0032210	regulation of telomere maintenance via telomerase	IEP	Predict GO terms from Neighborhoods
BP	GO:0032211	negative regulation of telomere maintenance via telomerase	IEP	Predict GO terms from Neighborhoods
BP	GO:0034086	maintenance of sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0034088	maintenance of mitotic sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0034198	cellular response to amino acid starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0034968	histone lysine methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042126	nitrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042128	nitrate assimilation	IEP	Predict GO terms from Neighborhoods
MF	GO:0042162	telomeric DNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0042644	chloroplast nucleoid	IEP	Predict GO terms from Neighborhoods
MF	GO:0042800	histone methyltransferase activity (H3-K4 specific)	IEP	Predict GO terms from Neighborhoods
BP	GO:0043414	macromolecule methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043555	regulation of translation in response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0043558	regulation of translational initiation in response to stress	IEP	Predict GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045910	negative regulation of DNA recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0051568	histone H3-K4 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0061983	meiosis II cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071467	cellular response to pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0071468	cellular response to acidic pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0071941	nitrogen cycle metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072755	cellular response to benomyl	IEP	Predict GO terms from Neighborhoods
MF	GO:0099094	ligand-gated cation channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0099504	synaptic vesicle cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:1901561	response to benomyl	IEP	Predict GO terms from Neighborhoods
BP	GO:1904356	regulation of telomere maintenance via telomere lengthening	IEP	Predict GO terms from Neighborhoods
BP	GO:1904357	negative regulation of telomere maintenance via telomere lengthening	IEP	Predict GO terms from Neighborhoods
BP	GO:1990451	cellular stress response to acidic pH	IEP	Predict GO terms from Neighborhoods
BP	GO:1990573	potassium ion import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1990928	response to amino acid starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000279	negative regulation of DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007109	Brix	51	151

External Links

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SOLTUB.AGRIA.G00000037980

Expression Profile

Co-expression Networks

Functional Annotation