SOLTUB.AGRIA.G00000038074


Description : RNA-binding protein 38


Gene families : OG_02_0011247 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000038074
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_79


Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA AHRD
BP GO:0001756 somitogenesis IEA AHRD
BP GO:0001947 heart looping IEA AHRD
BP GO:0003197 endocardial cushion development IEA AHRD
BP GO:0003228 atrial cardiac muscle tissue development IEA AHRD
CC GO:0005654 nucleoplasm IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005829 cytosol IEA AHRD
BP GO:0006952 defense response IEA AHRD
BP GO:0006977 DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest IEA AHRD
BP GO:0006978 DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator IEA AHRD
BP GO:0008219 cell death IEA AHRD
BP GO:0008285 negative regulation of cell population proliferation IEA AHRD
BP GO:0009409 response to cold IEA AHRD
BP GO:0009414 response to water deprivation IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
BP GO:0009651 response to salt stress IEA AHRD
BP GO:0009693 ethylene biosynthetic process IEA AHRD
BP GO:0009737 response to abscisic acid IEA AHRD
BP GO:0010029 regulation of seed germination IEA AHRD
BP GO:0010150 leaf senescence IEA AHRD
MF GO:0035925 mRNA 3'-UTR AU-rich region binding IEA AHRD
MF GO:0042802 identical protein binding IEA AHRD
BP GO:0045663 positive regulation of myoblast differentiation IEA AHRD
BP GO:0048702 embryonic neurocranium morphogenesis IEA AHRD
BP GO:0060298 positive regulation of sarcomere organization IEA AHRD
BP GO:0061158 3'-UTR-mediated mRNA destabilization IEA AHRD
MF GO:0097157 pre-mRNA intronic binding IEA AHRD
BP GO:1902811 positive regulation of skeletal muscle fiber differentiation IEA AHRD
BP GO:1905870 positive regulation of 3'-UTR-mediated mRNA stabilization IEA AHRD
MF GO:1990715 mRNA CDS binding IEA AHRD
MF GO:1990825 sequence-specific mRNA binding IEA AHRD
BP GO:2000738 positive regulation of stem cell differentiation IEA AHRD
BP GO:2000766 negative regulation of cytoplasmic translation IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predict GO terms from Neighborhoods
CC GO:0000329 fungal-type vacuole membrane IEP Predict GO terms from Neighborhoods
BP GO:0000902 cell morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0000904 cell morphogenesis involved in differentiation IEP Predict GO terms from Neighborhoods
BP GO:0001736 establishment of planar polarity IEP Predict GO terms from Neighborhoods
BP GO:0003333 amino acid transmembrane transport IEP Predict GO terms from Neighborhoods
MF GO:0005215 transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0005319 lipid transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0005451 monovalent cation:proton antiporter activity IEP Predict GO terms from Neighborhoods
MF GO:0005548 phospholipid transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0005628 prospore membrane IEP Predict GO terms from Neighborhoods
CC GO:0005886 plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0006644 phospholipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006650 glycerophospholipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006656 phosphatidylcholine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006657 CDP-choline pathway IEP Predict GO terms from Neighborhoods
BP GO:0006869 lipid transport IEP Predict GO terms from Neighborhoods
BP GO:0006874 cellular calcium ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0006882 cellular zinc ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0006892 post-Golgi vesicle-mediated transport IEP Predict GO terms from Neighborhoods
BP GO:0006893 Golgi to plasma membrane transport IEP Predict GO terms from Neighborhoods
BP GO:0006896 Golgi to vacuole transport IEP Predict GO terms from Neighborhoods
BP GO:0006900 vesicle budding from membrane IEP Predict GO terms from Neighborhoods
BP GO:0007164 establishment of tissue polarity IEP Predict GO terms from Neighborhoods
MF GO:0008525 phosphatidylcholine transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0008526 phosphatidylinositol transfer activity IEP Predict GO terms from Neighborhoods
BP GO:0008654 phospholipid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0008810 cellulase activity IEP Predict GO terms from Neighborhoods
BP GO:0009251 glucan catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0009504 cell plate IEP Predict GO terms from Neighborhoods
BP GO:0009791 post-embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0009826 unidimensional cell growth IEP Predict GO terms from Neighborhoods
BP GO:0009908 flower development IEP Predict GO terms from Neighborhoods
BP GO:0009932 cell tip growth IEP Predict GO terms from Neighborhoods
MF GO:0010011 auxin binding IEP Predict GO terms from Neighborhoods
MF GO:0010328 auxin influx transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0010563 negative regulation of phosphorus metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0015085 calcium ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015291 secondary active transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015298 solute:cation antiporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015299 solute:proton antiporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015368 calcium:cation antiporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015369 calcium:proton antiporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015386 potassium:proton antiporter activity IEP Predict GO terms from Neighborhoods
CC GO:0016020 membrane IEP Predict GO terms from Neighborhoods
BP GO:0016049 cell growth IEP Predict GO terms from Neighborhoods
BP GO:0019216 regulation of lipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019220 regulation of phosphate metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0022804 active transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0022821 solute:potassium antiporter activity IEP Predict GO terms from Neighborhoods
BP GO:0030026 cellular manganese ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0030244 cellulose biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0030245 cellulose catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0031012 extracellular matrix IEP Predict GO terms from Neighborhoods
BP GO:0031322 ascospore-type prospore-specific spindle pole body remodeling IEP Predict GO terms from Neighborhoods
BP GO:0031648 protein destabilization IEP Predict GO terms from Neighborhoods
CC GO:0032153 cell division site IEP Predict GO terms from Neighborhoods
BP GO:0034486 vacuolar transmembrane transport IEP Predict GO terms from Neighborhoods
CC GO:0035619 root hair tip IEP Predict GO terms from Neighborhoods
BP GO:0040007 growth IEP Predict GO terms from Neighborhoods
MF GO:0042562 hormone binding IEP Predict GO terms from Neighborhoods
BP GO:0043001 Golgi to plasma membrane protein transport IEP Predict GO terms from Neighborhoods
BP GO:0044247 cellular polysaccharide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045017 glycerolipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0045833 negative regulation of lipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045936 negative regulation of phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046470 phosphatidylcholine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046486 glycerolipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046488 phosphatidylinositol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046890 regulation of lipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0048193 Golgi vesicle transport IEP Predict GO terms from Neighborhoods
BP GO:0048194 Golgi vesicle budding IEP Predict GO terms from Neighborhoods
BP GO:0048367 shoot system development IEP Predict GO terms from Neighborhoods
BP GO:0048469 cell maturation IEP Predict GO terms from Neighborhoods
BP GO:0048589 developmental growth IEP Predict GO terms from Neighborhoods
BP GO:0048731 system development IEP Predict GO terms from Neighborhoods
BP GO:0048764 trichoblast maturation IEP Predict GO terms from Neighborhoods
BP GO:0048765 root hair cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0048768 root hair cell tip growth IEP Predict GO terms from Neighborhoods
BP GO:0048829 root cap development IEP Predict GO terms from Neighborhoods
BP GO:0051055 negative regulation of lipid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0051139 metal cation:proton antiporter activity IEP Predict GO terms from Neighborhoods
BP GO:0051174 regulation of phosphorus metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051274 beta-glucan biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0051275 beta-glucan catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0051286 cell tip IEP Predict GO terms from Neighborhoods
BP GO:0051592 response to calcium ion IEP Predict GO terms from Neighborhoods
BP GO:0055062 phosphate ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0055069 zinc ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0055071 manganese ion homeostasis IEP Predict GO terms from Neighborhoods
CC GO:0060187 cell pole IEP Predict GO terms from Neighborhoods
BP GO:0060560 developmental growth involved in morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0060919 auxin import into cell IEP Predict GO terms from Neighborhoods
BP GO:0061024 membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0061951 establishment of protein localization to plasma membrane IEP Predict GO terms from Neighborhoods
CC GO:0062039 biofilm matrix IEP Predict GO terms from Neighborhoods
CC GO:0062040 fungal biofilm matrix IEP Predict GO terms from Neighborhoods
BP GO:0070588 calcium ion transmembrane transport IEP Predict GO terms from Neighborhoods
MF GO:0070696 transmembrane receptor protein serine/threonine kinase binding IEP Predict GO terms from Neighborhoods
BP GO:0071071 regulation of phospholipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0071072 negative regulation of phospholipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0071705 nitrogen compound transport IEP Predict GO terms from Neighborhoods
BP GO:0072506 trivalent inorganic anion homeostasis IEP Predict GO terms from Neighborhoods
MF GO:0080161 auxin transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0090407 organophosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0090567 reproductive shoot system development IEP Predict GO terms from Neighborhoods
MF GO:0120013 lipid transfer activity IEP Predict GO terms from Neighborhoods
MF GO:0120014 phospholipid transfer activity IEP Predict GO terms from Neighborhoods
BP GO:0140146 calcium ion import into vacuole IEP Predict GO terms from Neighborhoods
MF GO:0140828 metal cation:monoatomic cation antiporter activity IEP Predict GO terms from Neighborhoods
BP GO:0150172 regulation of phosphatidylcholine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0150174 negative regulation of phosphatidylcholine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903046 meiotic cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:1903725 regulation of phospholipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903726 negative regulation of phospholipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:2001245 regulation of phosphatidylcholine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2001246 negative regulation of phosphatidylcholine biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000504 RRM_dom 231 286
IPR035979 RBD_domain_sf 228 316
No external refs found!