SOLTUB.AGRIA.G00000038115

Description : pentatricopeptide (PPR) repeat-containing protein

Gene families : OG_02_0007037 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000038115
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_97

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003727	single-stranded RNA binding	IEA	AHRD
MF	GO:0003729	mRNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	AHRD
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009553	embryo sac development	IEA	AHRD
BP	GO:0009555	pollen development	IEA	AHRD
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IEA	AHRD
CC	GO:0012505	endomembrane system	IEA	AHRD
MF	GO:0019843	rRNA binding	IEA	AHRD
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048868	pollen tube development	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
MF	GO:1990825	sequence-specific mRNA binding	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
BP	GO:0006721	terpenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006995	cellular response to nitrogen starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0008202	steroid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008324	cation transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009267	cellular response to starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010051	xylem and phloem pattern formation	IEP	Predict GO terms from Neighborhoods
MF	GO:0015101	organic cation transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015203	polyamine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015204	urea transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015293	symporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015489	putrescine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015606	spermidine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015695	organic cation transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015840	urea transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015846	polyamine transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015847	putrescine transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015848	spermidine transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016098	monoterpenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016099	monoterpenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016114	terpenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Predict GO terms from Neighborhoods
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Predict GO terms from Neighborhoods
BP	GO:0019755	one-carbon compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0031669	cellular response to nutrient levels	IEP	Predict GO terms from Neighborhoods
MF	GO:0035671	enone reductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042214	terpene metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042594	response to starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042886	amide transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0042887	amide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043562	cellular response to nitrogen levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0043692	monoterpene metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043693	monoterpene biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046246	terpene biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0047787	delta4-3-oxosteroid 5beta-reductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0071918	urea transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0120251	hydrocarbon biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0120252	hydrocarbon metabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	120	167
IPR002885	Pentatricopeptide_repeat	124	157
IPR002885	Pentatricopeptide_repeat	159	191

External Links

No external refs found!

SOLTUB.AGRIA.G00000038115

Expression Profile

Co-expression Networks

Functional Annotation