SOLTUB.AGRIA.G00000003881

Description : 40S ribosomal protein S24

Gene families : OG_02_0001005 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000003881
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_37

Target	Alias	Description	ECC score	Gene Family Method
SOLTUB.AGRIA.G00000031691	No alias	40S ribosomal protein S24	0.03	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000031724	No alias	40S ribosomal protein S24	0.07	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000031691	No alias	40S ribosomal protein S24	0.03	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000031724	No alias	40S ribosomal protein S24	0.07	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000031691	No alias	40S ribosomal protein S24	0.03	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000031724	No alias	40S ribosomal protein S24	0.07	Orthogroups with 8 Potato genotypes

Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA	AHRD
BP	GO:0001889	liver development	None	Extended
BP	GO:0002181	cytoplasmic translation	IEA	AHRD
BP	GO:0002262	myeloid cell homeostasis	None	Extended
BP	GO:0002376	immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003735	structural constituent of ribosome	IEA	AHRD
MF	GO:0003743	translation initiation factor activity	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IEA	AHRD
CC	GO:0005730	nucleolus	IEA	AHRD
CC	GO:0005774	vacuolar membrane	IEA	AHRD
CC	GO:0005783	endoplasmic reticulum	IEA	AHRD
CC	GO:0005840	ribosome	None	Extended
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006412	translation	None	Extended
BP	GO:0006413	translational initiation	IEA	AHRD
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	IEA	AHRD
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022627	cytosolic small ribosomal subunit	IEA	AHRD
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0030490	maturation of SSU-rRNA	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031099	regeneration	None	Extended
BP	GO:0031100	animal organ regeneration	None	Extended
MF	GO:0031369	translation initiation factor binding	IEA	AHRD
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034101	erythrocyte homeostasis	IEA	AHRD
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
CC	GO:0042788	polysomal ribosome	IEA	AHRD
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048732	gland development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048872	homeostasis of number of cells	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097421	liver regeneration	IEA	AHRD
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000027	ribosomal large subunit assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0000028	ribosomal small subunit assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0000036	acyl carrier activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0000049	tRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0000054	ribosomal subunit export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0000056	ribosomal small subunit export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0000448	cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000470	maturation of LSU-rRNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0001221	transcription coregulator binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001223	transcription coactivator binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001818	negative regulation of cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002182	cytoplasmic translational elongation	IEP	Predict GO terms from Neighborhoods
MF	GO:0004857	enzyme inhibitor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005539	glycosaminoglycan binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005640	nuclear outer membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005654	nucleoplasm	IEP	Predict GO terms from Neighborhoods
CC	GO:0005911	cell-cell junction	IEP	Predict GO terms from Neighborhoods
BP	GO:0006417	regulation of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006611	protein export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006913	nucleocytoplasmic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007411	axon guidance	IEP	Predict GO terms from Neighborhoods
MF	GO:0008201	heparin binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0009506	plasmodesma	IEP	Predict GO terms from Neighborhoods
BP	GO:0009955	adaxial/abaxial pattern specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009965	leaf morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009967	positive regulation of signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0010458	exit from mitosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010468	regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010574	regulation of vascular endothelial growth factor production	IEP	Predict GO terms from Neighborhoods
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010647	positive regulation of cell communication	IEP	Predict GO terms from Neighborhoods
CC	GO:0014069	postsynaptic density	IEP	Predict GO terms from Neighborhoods
CC	GO:0015934	large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
MF	GO:0017056	structural constituent of nuclear pore	IEP	Predict GO terms from Neighborhoods
MF	GO:0019838	growth factor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0020027	hemoglobin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0021545	cranial nerve development	IEP	Predict GO terms from Neighborhoods
BP	GO:0021554	optic nerve development	IEP	Predict GO terms from Neighborhoods
BP	GO:0021675	nerve development	IEP	Predict GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0023051	regulation of signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0023056	positive regulation of signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0030054	cell junction	IEP	Predict GO terms from Neighborhoods
BP	GO:0030217	T cell differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0030234	enzyme regulator activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0030684	preribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0030687	preribosome, large subunit precursor	IEP	Predict GO terms from Neighborhoods
BP	GO:0031290	retinal ganglion cell axon guidance	IEP	Predict GO terms from Neighborhoods
MF	GO:0031386	protein tag	IEP	Predict GO terms from Neighborhoods
BP	GO:0031396	regulation of protein ubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0031397	negative regulation of protein ubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0031400	negative regulation of protein modification process	IEP	Predict GO terms from Neighborhoods
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031672	A band	IEP	Predict GO terms from Neighborhoods
BP	GO:0032986	protein-DNA complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0033119	negative regulation of RNA splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0033750	ribosome localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0034063	stress granule assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0034198	cellular response to amino acid starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042110	T cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042273	ribosomal large subunit biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042306	regulation of protein import into nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0042307	positive regulation of protein import into nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0042541	hemoglobin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043086	negative regulation of catalytic activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0044613	nuclear pore central transport channel	IEP	Predict GO terms from Neighborhoods
MF	GO:0044620	ACP phosphopantetheine attachment site binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0045202	synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0046631	alpha-beta T cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046632	alpha-beta T cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046824	positive regulation of nucleocytoplasmic transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0048027	mRNA 5'-UTR binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051168	nuclear export	IEP	Predict GO terms from Neighborhoods
BP	GO:0051169	nuclear transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0051192	prosthetic group binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051338	regulation of transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051348	negative regulation of transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051438	regulation of ubiquitin-protein transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051444	negative regulation of ubiquitin-protein transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Predict GO terms from Neighborhoods
MF	GO:0055105	ubiquitin-protein transferase inhibitor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0055106	ubiquitin-protein transferase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060041	retina development in camera-type eye	IEP	Predict GO terms from Neighborhoods
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061484	hematopoietic stem cell homeostasis	IEP	Predict GO terms from Neighborhoods
MF	GO:0061608	nuclear import signal receptor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0070161	anchoring junction	IEP	Predict GO terms from Neighborhoods
MF	GO:0070180	large ribosomal subunit rRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0070181	small ribosomal subunit rRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0071236	cellular response to antibiotic	IEP	Predict GO terms from Neighborhoods
BP	GO:0071310	cellular response to organic substance	IEP	Predict GO terms from Neighborhoods
BP	GO:0071320	cellular response to cAMP	IEP	Predict GO terms from Neighborhoods
BP	GO:0071417	cellular response to organonitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:0071495	cellular response to endogenous stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0072716	response to actinomycin D	IEP	Predict GO terms from Neighborhoods
BP	GO:0072717	cellular response to actinomycin D	IEP	Predict GO terms from Neighborhoods
BP	GO:0090204	protein localization to nuclear pore	IEP	Predict GO terms from Neighborhoods
BP	GO:0090435	protein localization to nuclear envelope	IEP	Predict GO terms from Neighborhoods
BP	GO:0097327	response to antineoplastic agent	IEP	Predict GO terms from Neighborhoods
MF	GO:0097371	MDM2/MDM4 family protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0097485	neuron projection guidance	IEP	Predict GO terms from Neighborhoods
CC	GO:0098552	side of membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098554	cytoplasmic side of endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098556	cytoplasmic side of rough endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098562	cytoplasmic side of membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0098772	molecular function regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0099171	presynaptic modulation of chemical synaptic transmission	IEP	Predict GO terms from Neighborhoods
BP	GO:0099547	regulation of translation at synapse, modulating synaptic transmission	IEP	Predict GO terms from Neighborhoods
CC	GO:0099572	postsynaptic specialization	IEP	Predict GO terms from Neighborhoods
BP	GO:0099577	regulation of translation at presynapse, modulating synaptic transmission	IEP	Predict GO terms from Neighborhoods
MF	GO:0140104	molecular carrier activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0140243	regulation of translation at synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0140244	regulation of translation at presynapse	IEP	Predict GO terms from Neighborhoods
MF	GO:0140414	phosphopantetheine-dependent carrier activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900087	positive regulation of G1/S transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:1900182	positive regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:1901699	cellular response to nitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:1901796	regulation of signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:1901798	positive regulation of signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:1902533	positive regulation of intracellular signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:1902808	positive regulation of cell cycle G1/S phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1903320	regulation of protein modification by small protein conjugation or removal	IEP	Predict GO terms from Neighborhoods
BP	GO:1903321	negative regulation of protein modification by small protein conjugation or removal	IEP	Predict GO terms from Neighborhoods
BP	GO:1904046	negative regulation of vascular endothelial growth factor production	IEP	Predict GO terms from Neighborhoods
BP	GO:1904400	response to Thyroid stimulating hormone	IEP	Predict GO terms from Neighborhoods
BP	GO:1904401	cellular response to Thyroid stimulating hormone	IEP	Predict GO terms from Neighborhoods
BP	GO:1904587	response to glycoprotein	IEP	Predict GO terms from Neighborhoods
BP	GO:1904588	cellular response to glycoprotein	IEP	Predict GO terms from Neighborhoods
BP	GO:1904666	regulation of ubiquitin protein ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1904667	negative regulation of ubiquitin protein ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1905392	plant organ morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1990089	response to nerve growth factor	IEP	Predict GO terms from Neighborhoods
BP	GO:1990090	cellular response to nerve growth factor stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:1990145	maintenance of translational fidelity	IEP	Predict GO terms from Neighborhoods
BP	GO:1990928	response to amino acid starvation	IEP	Predict GO terms from Neighborhoods
MF	GO:1990932	5.8S rRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:1990948	ubiquitin ligase inhibitor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR012678	Ribosomal_L23/L15e_core_dom_sf	6	108
IPR001976	Ribosomal_S24e	26	103

External Links

No external refs found!

SOLTUB.AGRIA.G00000003881

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation