SOLTUB.AGRIA.G00000039029

Description : RING/U-box superfamily protein, putative

Gene families : OG_02_0021525 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000039029
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_32

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	AHRD
MF	GO:0005488	binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	IEA	AHRD
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	IEA	AHRD
BP	GO:0010243	response to organonitrogen compound	None	Extended
CC	GO:0016020	membrane	IEA	AHRD
BP	GO:0016567	protein ubiquitination	IEA	AHRD
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	IEA	AHRD
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0050789	regulation of biological process	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003720	telomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004497	monooxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004673	protein histidine kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006278	RNA-templated DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007602	phototransduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0009413	response to flooding	IEP	Predict GO terms from Neighborhoods
CC	GO:0009578	etioplast stroma	IEP	Predict GO terms from Neighborhoods
BP	GO:0009585	red, far-red light phototransduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0009642	response to light intensity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009720	detection of hormone stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009725	response to hormone	IEP	Predict GO terms from Neighborhoods
BP	GO:0009726	detection of endogenous stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009727	detection of ethylene stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009733	response to auxin	IEP	Predict GO terms from Neighborhoods
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0009861	jasmonic acid and ethylene-dependent systemic resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:0009864	induced systemic resistance, jasmonic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009888	tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010087	phloem or xylem histogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010104	regulation of ethylene-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010185	regulation of cellular defense response	IEP	Predict GO terms from Neighborhoods
BP	GO:0010186	positive regulation of cellular defense response	IEP	Predict GO terms from Neighborhoods
BP	GO:0010288	response to lead ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010364	regulation of ethylene biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010365	positive regulation of ethylene biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0015692	lead ion transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Predict GO terms from Neighborhoods
MF	GO:0016712	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	IEP	Predict GO terms from Neighborhoods
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0018674	(S)-limonene 3-monooxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019113	limonene monooxygenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031155	regulation of reproductive fruiting body development	IEP	Predict GO terms from Neighborhoods
BP	GO:0031335	regulation of sulfur amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031337	positive regulation of sulfur amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0034061	DNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0035835	indole alkaloid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0038199	ethylene receptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042214	terpene metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042545	cell wall modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046246	terpene biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046937	phytochelatin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046938	phytochelatin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048317	seed morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048467	gynoecium development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051176	positive regulation of sulfur metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051252	regulation of RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051301	cell division	IEP	Predict GO terms from Neighborhoods
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051606	detection of stimulus	IEP	Predict GO terms from Neighborhoods
MF	GO:0051740	ethylene binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051761	sesquiterpene metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051762	sesquiterpene biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0062150	amorpha-4,11-diene 12-monooxygenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070297	regulation of phosphorelay signal transduction system	IEP	Predict GO terms from Neighborhoods
BP	GO:0071284	cellular response to lead ion	IEP	Predict GO terms from Neighborhoods
MF	GO:0072328	alkene binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0075260	regulation of spore-bearing organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0080060	integument development	IEP	Predict GO terms from Neighborhoods
BP	GO:0080127	fruit septum development	IEP	Predict GO terms from Neighborhoods
BP	GO:0080191	secondary thickening	IEP	Predict GO terms from Neighborhoods
BP	GO:0090332	stomatal closure	IEP	Predict GO terms from Neighborhoods
MF	GO:0102934	costunolide synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0106223	germacrene A hydroxylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0120251	hydrocarbon biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0120252	hydrocarbon metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1900908	regulation of olefin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1900910	positive regulation of olefin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1900911	regulation of olefin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1900913	positive regulation of olefin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901419	regulation of response to alcohol	IEP	Predict GO terms from Neighborhoods
BP	GO:1902265	abscisic acid homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:1902890	regulation of root hair elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1905328	plant septum development	IEP	Predict GO terms from Neighborhoods
BP	GO:1905957	regulation of cellular response to alcohol	IEP	Predict GO terms from Neighborhoods
BP	GO:2000904	regulation of starch metabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR012862	DUF1635	12	216
IPR001841	Znf_RING	384	427

External Links

No external refs found!

SOLTUB.AGRIA.G00000039029

Expression Profile

Co-expression Networks

Functional Annotation