SOLTUB.AGRIA.G00000039070


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_02_0005192 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000039070
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_65


Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA AHRD
MF GO:0003697 single-stranded DNA binding IEA AHRD
MF GO:0003727 single-stranded RNA binding IEA AHRD
CC GO:0005654 nucleoplasm IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005829 cytosol IEA AHRD
BP GO:0006913 nucleocytoplasmic transport IEA AHRD
BP GO:0006952 defense response IEA AHRD
BP GO:0008219 cell death IEA AHRD
BP GO:0009693 ethylene biosynthetic process IEA AHRD
BP GO:0009738 abscisic acid-activated signaling pathway IEA AHRD
BP GO:0010035 response to inorganic substance IEA AHRD
BP GO:0010150 leaf senescence IEA AHRD
BP GO:0010605 negative regulation of macromolecule metabolic process IEA AHRD
BP GO:0010628 positive regulation of gene expression IEA AHRD
MF GO:0035925 mRNA 3'-UTR AU-rich region binding IEA AHRD
MF GO:0042802 identical protein binding IEA AHRD
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEA AHRD
BP GO:0048513 animal organ development IEA AHRD
BP GO:0051028 mRNA transport IEA AHRD
BP GO:0065008 regulation of biological quality IEA AHRD
MF GO:0140666 annealing activity IEA AHRD
BP GO:1903311 regulation of mRNA metabolic process IEA AHRD
CC GO:1990904 ribonucleoprotein complex IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Predict GO terms from Neighborhoods
CC GO:0000781 chromosome, telomeric region IEP Predict GO terms from Neighborhoods
MF GO:0001069 regulatory region RNA binding IEP Predict GO terms from Neighborhoods
BP GO:0001732 formation of cytoplasmic translation initiation complex IEP Predict GO terms from Neighborhoods
BP GO:0001893 maternal placenta development IEP Predict GO terms from Neighborhoods
BP GO:0002183 cytoplasmic translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0002188 translation reinitiation IEP Predict GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Predict GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005844 polysome IEP Predict GO terms from Neighborhoods
CC GO:0005849 mRNA cleavage factor complex IEP Predict GO terms from Neighborhoods
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predict GO terms from Neighborhoods
BP GO:0006379 mRNA cleavage IEP Predict GO terms from Neighborhoods
BP GO:0006405 RNA export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0006406 mRNA export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0006413 translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0006417 regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0006935 chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0007283 spermatogenesis IEP Predict GO terms from Neighborhoods
BP GO:0007319 negative regulation of oskar mRNA translation IEP Predict GO terms from Neighborhoods
BP GO:0007507 heart development IEP Predict GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0008187 poly-pyrimidine tract binding IEP Predict GO terms from Neighborhoods
MF GO:0008266 poly(U) RNA binding IEP Predict GO terms from Neighborhoods
BP GO:0008283 cell population proliferation IEP Predict GO terms from Neighborhoods
BP GO:0008406 gonad development IEP Predict GO terms from Neighborhoods
BP GO:0008584 male gonad development IEP Predict GO terms from Neighborhoods
BP GO:0009891 positive regulation of biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009911 positive regulation of flower development IEP Predict GO terms from Neighborhoods
BP GO:0010001 glial cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP Predict GO terms from Neighborhoods
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010608 post-transcriptional regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010632 regulation of epithelial cell migration IEP Predict GO terms from Neighborhoods
BP GO:0010634 positive regulation of epithelial cell migration IEP Predict GO terms from Neighborhoods
CC GO:0014069 postsynaptic density IEP Predict GO terms from Neighborhoods
BP GO:0014706 striated muscle tissue development IEP Predict GO terms from Neighborhoods
CC GO:0015030 Cajal body IEP Predict GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0016233 telomere capping IEP Predict GO terms from Neighborhoods
CC GO:0016282 eukaryotic 43S preinitiation complex IEP Predict GO terms from Neighborhoods
CC GO:0016363 nuclear matrix IEP Predict GO terms from Neighborhoods
CC GO:0016604 nuclear body IEP Predict GO terms from Neighborhoods
BP GO:0017148 negative regulation of translation IEP Predict GO terms from Neighborhoods
MF GO:0019899 enzyme binding IEP Predict GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Predict GO terms from Neighborhoods
BP GO:0022618 ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
CC GO:0030017 sarcomere IEP Predict GO terms from Neighborhoods
BP GO:0030029 actin filament-based process IEP Predict GO terms from Neighborhoods
BP GO:0030036 actin cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0030324 lung development IEP Predict GO terms from Neighborhoods
BP GO:0030334 regulation of cell migration IEP Predict GO terms from Neighborhoods
BP GO:0030335 positive regulation of cell migration IEP Predict GO terms from Neighborhoods
MF GO:0030371 translation repressor activity IEP Predict GO terms from Neighborhoods
MF GO:0030971 receptor tyrosine kinase binding IEP Predict GO terms from Neighborhoods
BP GO:0031053 primary miRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0031369 translation initiation factor binding IEP Predict GO terms from Neighborhoods
BP GO:0031960 response to corticosteroid IEP Predict GO terms from Neighborhoods
CC GO:0031982 vesicle IEP Predict GO terms from Neighborhoods
BP GO:0032200 telomere organization IEP Predict GO terms from Neighborhoods
BP GO:0032204 regulation of telomere maintenance IEP Predict GO terms from Neighborhoods
BP GO:0032206 positive regulation of telomere maintenance IEP Predict GO terms from Neighborhoods
BP GO:0032392 DNA geometric change IEP Predict GO terms from Neighborhoods
BP GO:0033044 regulation of chromosome organization IEP Predict GO terms from Neighborhoods
BP GO:0033119 negative regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0033120 positive regulation of RNA splicing IEP Predict GO terms from Neighborhoods
CC GO:0033290 eukaryotic 48S preinitiation complex IEP Predict GO terms from Neighborhoods
MF GO:0034046 poly(G) binding IEP Predict GO terms from Neighborhoods
BP GO:0034248 regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035196 miRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0035198 miRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0035613 RNA stem-loop binding IEP Predict GO terms from Neighborhoods
MF GO:0036002 pre-mRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0040017 positive regulation of locomotion IEP Predict GO terms from Neighborhoods
MF GO:0042162 telomeric DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0042330 taxis IEP Predict GO terms from Neighborhoods
MF GO:0043047 single-stranded telomeric DNA binding IEP Predict GO terms from Neighborhoods
CC GO:0043186 P granule IEP Predict GO terms from Neighborhoods
CC GO:0043204 perikaryon IEP Predict GO terms from Neighborhoods
CC GO:0043230 extracellular organelle IEP Predict GO terms from Neighborhoods
BP GO:0043408 regulation of MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0043409 negative regulation of MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0043484 regulation of RNA splicing IEP Predict GO terms from Neighborhoods
CC GO:0043614 multi-eIF complex IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
BP GO:0044806 G-quadruplex DNA unwinding IEP Predict GO terms from Neighborhoods
MF GO:0045182 translation regulator activity IEP Predict GO terms from Neighborhoods
BP GO:0045596 negative regulation of cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045727 positive regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0046011 regulation of oskar mRNA translation IEP Predict GO terms from Neighborhoods
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0048025 negative regulation of mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0048026 positive regulation of mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
MF GO:0048027 mRNA 5'-UTR binding IEP Predict GO terms from Neighborhoods
BP GO:0048232 male gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0048468 cell development IEP Predict GO terms from Neighborhoods
BP GO:0048497 maintenance of floral organ identity IEP Predict GO terms from Neighborhoods
BP GO:0048522 positive regulation of cellular process IEP Predict GO terms from Neighborhoods
BP GO:0048545 response to steroid hormone IEP Predict GO terms from Neighborhoods
BP GO:0048583 regulation of response to stimulus IEP Predict GO terms from Neighborhoods
BP GO:0048709 oligodendrocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0048864 stem cell development IEP Predict GO terms from Neighborhoods
BP GO:0050684 regulation of mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0050685 positive regulation of mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0050686 negative regulation of mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0051054 positive regulation of DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051168 nuclear export IEP Predict GO terms from Neighborhoods
BP GO:0051246 regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051247 positive regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051347 positive regulation of transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051385 response to mineralocorticoid IEP Predict GO terms from Neighborhoods
BP GO:0051972 regulation of telomerase activity IEP Predict GO terms from Neighborhoods
BP GO:0060135 maternal process involved in female pregnancy IEP Predict GO terms from Neighborhoods
BP GO:0060537 muscle tissue development IEP Predict GO terms from Neighborhoods
BP GO:0061061 muscle structure development IEP Predict GO terms from Neighborhoods
MF GO:0061980 regulatory RNA binding IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0065009 regulation of molecular function IEP Predict GO terms from Neighborhoods
CC GO:0065010 extracellular membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0070062 extracellular exosome IEP Predict GO terms from Neighborhoods
MF GO:0070182 DNA polymerase binding IEP Predict GO terms from Neighborhoods
BP GO:0070372 regulation of ERK1 and ERK2 cascade IEP Predict GO terms from Neighborhoods
BP GO:0070373 negative regulation of ERK1 and ERK2 cascade IEP Predict GO terms from Neighborhoods
MF GO:0070717 poly-purine tract binding IEP Predict GO terms from Neighborhoods
BP GO:0070918 small regulatory ncRNA processing IEP Predict GO terms from Neighborhoods
CC GO:0070993 translation preinitiation complex IEP Predict GO terms from Neighborhoods
CC GO:0071013 catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0071103 DNA conformation change IEP Predict GO terms from Neighborhoods
BP GO:0071216 cellular response to biotic stimulus IEP Predict GO terms from Neighborhoods
CC GO:0071540 eukaryotic translation initiation factor 3 complex, eIF3e IEP Predict GO terms from Neighborhoods
CC GO:0071541 eukaryotic translation initiation factor 3 complex, eIF3m IEP Predict GO terms from Neighborhoods
CC GO:0071598 neuronal ribonucleoprotein granule IEP Predict GO terms from Neighborhoods
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0072396 response to cell cycle checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0072402 response to DNA integrity checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0072423 response to DNA damage checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0072659 protein localization to plasma membrane IEP Predict GO terms from Neighborhoods
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Predict GO terms from Neighborhoods
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Predict GO terms from Neighborhoods
BP GO:0090700 maintenance of plant organ identity IEP Predict GO terms from Neighborhoods
MF GO:0097157 pre-mRNA intronic binding IEP Predict GO terms from Neighborhoods
BP GO:0097190 apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0098505 G-rich strand telomeric DNA binding IEP Predict GO terms from Neighborhoods
CC GO:0098687 chromosomal region IEP Predict GO terms from Neighborhoods
BP GO:0098787 mRNA cleavage involved in mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0098789 pre-mRNA cleavage required for polyadenylation IEP Predict GO terms from Neighborhoods
MF GO:0098847 sequence-specific single stranded DNA binding IEP Predict GO terms from Neighborhoods
CC GO:0098978 glutamatergic synapse IEP Predict GO terms from Neighborhoods
CC GO:0099080 supramolecular complex IEP Predict GO terms from Neighborhoods
CC GO:0099522 cytosolic region IEP Predict GO terms from Neighborhoods
CC GO:0099524 postsynaptic cytosol IEP Predict GO terms from Neighborhoods
CC GO:0099572 postsynaptic specialization IEP Predict GO terms from Neighborhoods
BP GO:1903312 negative regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903313 positive regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
CC GO:1903561 extracellular vesicle IEP Predict GO terms from Neighborhoods
BP GO:1903684 regulation of border follicle cell migration IEP Predict GO terms from Neighborhoods
BP GO:1903688 positive regulation of border follicle cell migration IEP Predict GO terms from Neighborhoods
BP GO:1904356 regulation of telomere maintenance via telomere lengthening IEP Predict GO terms from Neighborhoods
BP GO:1904358 positive regulation of telomere maintenance via telomere lengthening IEP Predict GO terms from Neighborhoods
BP GO:1905661 regulation of telomerase RNA reverse transcriptase activity IEP Predict GO terms from Neighborhoods
BP GO:1905663 positive regulation of telomerase RNA reverse transcriptase activity IEP Predict GO terms from Neighborhoods
MF GO:1990247 N6-methyladenosine-containing RNA binding IEP Predict GO terms from Neighborhoods
MF GO:1990715 mRNA CDS binding IEP Predict GO terms from Neighborhoods
BP GO:1990778 protein localization to cell periphery IEP Predict GO terms from Neighborhoods
MF GO:1990782 protein tyrosine kinase binding IEP Predict GO terms from Neighborhoods
BP GO:2000070 regulation of response to water deprivation IEP Predict GO terms from Neighborhoods
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000145 regulation of cell motility IEP Predict GO terms from Neighborhoods
BP GO:2000147 positive regulation of cell motility IEP Predict GO terms from Neighborhoods
BP GO:2000241 regulation of reproductive process IEP Predict GO terms from Neighborhoods
BP GO:2000243 positive regulation of reproductive process IEP Predict GO terms from Neighborhoods
BP GO:2000278 regulation of DNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2001252 positive regulation of chromosome organization IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000504 RRM_dom 169 225
IPR000504 RRM_dom 72 138
IPR035979 RBD_domain_sf 160 272
IPR035979 RBD_domain_sf 66 159
No external refs found!