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    4. Sequence
    5. SOLTUB.AGRIA.G00000039091

    SOLTUB.AGRIA.G00000039091


    Description : 50S ribosomal L1


    Gene families : OG_02_0005178 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

    Sequence : coding (download), protein (download)


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    Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


    Type Description Actions
    Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000039091
    Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_65


    Type GO Term Name Evidence Source
    MF GO:0003723 RNA binding IEA AHRD
    BP GO:0010467 gene expression IEA AHRD
    CC GO:0015934 large ribosomal subunit IEA AHRD
    BP GO:0034641 cellular nitrogen compound metabolic process IEA AHRD
    BP GO:0044238 primary metabolic process IEA AHRD
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    Type GO Term Name Evidence Source
    BP GO:0000028 ribosomal small subunit assembly IEP Predict GO terms from Neighborhoods
    MF GO:0000166 nucleotide binding IEP Predict GO terms from Neighborhoods
    BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
    BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
    BP GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
    BP GO:0000469 cleavage involved in rRNA processing IEP Predict GO terms from Neighborhoods
    BP GO:0000470 maturation of LSU-rRNA IEP Predict GO terms from Neighborhoods
    BP GO:0000472 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
    BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP Predict GO terms from Neighborhoods
    BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
    BP GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
    CC GO:0000922 spindle pole IEP Predict GO terms from Neighborhoods
    BP GO:0000966 RNA 5'-end processing IEP Predict GO terms from Neighborhoods
    BP GO:0000967 rRNA 5'-end processing IEP Predict GO terms from Neighborhoods
    CC GO:0001650 fibrillar center IEP Predict GO terms from Neighborhoods
    MF GO:0003724 RNA helicase activity IEP Predict GO terms from Neighborhoods
    MF GO:0003729 mRNA binding IEP Predict GO terms from Neighborhoods
    MF GO:0003746 translation elongation factor activity IEP Predict GO terms from Neighborhoods
    MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Predict GO terms from Neighborhoods
    MF GO:0004177 aminopeptidase activity IEP Predict GO terms from Neighborhoods
    MF GO:0004386 helicase activity IEP Predict GO terms from Neighborhoods
    MF GO:0005158 insulin receptor binding IEP Predict GO terms from Neighborhoods
    MF GO:0005524 ATP binding IEP Predict GO terms from Neighborhoods
    MF GO:0005525 GTP binding IEP Predict GO terms from Neighborhoods
    CC GO:0005654 nucleoplasm IEP Predict GO terms from Neighborhoods
    CC GO:0005694 chromosome IEP Predict GO terms from Neighborhoods
    CC GO:0005697 telomerase holoenzyme complex IEP Predict GO terms from Neighborhoods
    CC GO:0005705 polytene chromosome interband IEP Predict GO terms from Neighborhoods
    CC GO:0005730 nucleolus IEP Predict GO terms from Neighborhoods
    CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
    CC GO:0005739 mitochondrion IEP Predict GO terms from Neighborhoods
    CC GO:0005742 mitochondrial outer membrane translocase complex IEP Predict GO terms from Neighborhoods
    CC GO:0005790 smooth endoplasmic reticulum IEP Predict GO terms from Neighborhoods
    CC GO:0005813 centrosome IEP Predict GO terms from Neighborhoods
    CC GO:0005815 microtubule organizing center IEP Predict GO terms from Neighborhoods
    CC GO:0005832 chaperonin-containing T-complex IEP Predict GO terms from Neighborhoods
    BP GO:0006139 nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
    BP GO:0006364 rRNA processing IEP Predict GO terms from Neighborhoods
    BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
    BP GO:0006403 RNA localization IEP Predict GO terms from Neighborhoods
    BP GO:0006414 translational elongation IEP Predict GO terms from Neighborhoods
    BP GO:0006457 protein folding IEP Predict GO terms from Neighborhoods
    BP GO:0006725 cellular aromatic compound metabolic process IEP Predict GO terms from Neighborhoods
    BP GO:0006839 mitochondrial transport IEP Predict GO terms from Neighborhoods
    BP GO:0007098 centrosome cycle IEP Predict GO terms from Neighborhoods
    BP GO:0007316 pole plasm RNA localization IEP Predict GO terms from Neighborhoods
    BP GO:0007339 binding of sperm to zona pellucida IEP Predict GO terms from Neighborhoods
    MF GO:0008186 ATP-dependent activity, acting on RNA IEP Predict GO terms from Neighborhoods
    MF GO:0008187 poly-pyrimidine tract binding IEP Predict GO terms from Neighborhoods
    MF GO:0008238 exopeptidase activity IEP Predict GO terms from Neighborhoods
    MF GO:0008266 poly(U) RNA binding IEP Predict GO terms from Neighborhoods
    BP GO:0008298 intracellular mRNA localization IEP Predict GO terms from Neighborhoods
    MF GO:0008320 protein transmembrane transporter activity IEP Predict GO terms from Neighborhoods
    BP GO:0009306 protein secretion IEP Predict GO terms from Neighborhoods
    BP GO:0009934 regulation of meristem structural organization IEP Predict GO terms from Neighborhoods
    BP GO:0009988 cell-cell recognition IEP Predict GO terms from Neighborhoods
    BP GO:0010042 response to manganese ion IEP Predict GO terms from Neighborhoods
    BP GO:0010528 regulation of transposition IEP Predict GO terms from Neighborhoods
    BP GO:0010529 negative regulation of transposition IEP Predict GO terms from Neighborhoods
    BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
    BP GO:0016072 rRNA metabolic process IEP Predict GO terms from Neighborhoods
    MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predict GO terms from Neighborhoods
    MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predict GO terms from Neighborhoods
    MF GO:0017076 purine nucleotide binding IEP Predict GO terms from Neighborhoods
    MF GO:0019001 guanyl nucleotide binding IEP Predict GO terms from Neighborhoods
    BP GO:0019094 pole plasm mRNA localization IEP Predict GO terms from Neighborhoods
    BP GO:0022618 ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
    MF GO:0022884 macromolecule transmembrane transporter activity IEP Predict GO terms from Neighborhoods
    CC GO:0030018 Z disc IEP Predict GO terms from Neighborhoods
    BP GO:0030150 protein import into mitochondrial matrix IEP Predict GO terms from Neighborhoods
    BP GO:0030240 skeletal muscle thin filament assembly IEP Predict GO terms from Neighborhoods
    BP GO:0030241 skeletal muscle myosin thick filament assembly IEP Predict GO terms from Neighborhoods
    BP GO:0030490 maturation of SSU-rRNA IEP Predict GO terms from Neighborhoods
    MF GO:0030515 snoRNA binding IEP Predict GO terms from Neighborhoods
    MF GO:0030554 adenyl nucleotide binding IEP Predict GO terms from Neighborhoods
    CC GO:0030684 preribosome IEP Predict GO terms from Neighborhoods
    CC GO:0030687 preribosome, large subunit precursor IEP Predict GO terms from Neighborhoods
    MF GO:0030911 TPR domain binding IEP Predict GO terms from Neighborhoods
    BP GO:0031023 microtubule organizing center organization IEP Predict GO terms from Neighborhoods
    BP GO:0031032 actomyosin structure organization IEP Predict GO terms from Neighborhoods
    BP GO:0031033 myosin filament organization IEP Predict GO terms from Neighborhoods
    BP GO:0031034 myosin filament assembly IEP Predict GO terms from Neighborhoods
    CC GO:0031039 macronucleus IEP Predict GO terms from Neighborhoods
    CC GO:0031428 box C/D RNP complex IEP Predict GO terms from Neighborhoods
    BP GO:0031647 regulation of protein stability IEP Predict GO terms from Neighborhoods
    MF GO:0031681 G-protein beta-subunit binding IEP Predict GO terms from Neighborhoods
    CC GO:0032040 small-subunit processome IEP Predict GO terms from Neighborhoods
    BP GO:0032204 regulation of telomere maintenance IEP Predict GO terms from Neighborhoods
    BP GO:0032206 positive regulation of telomere maintenance IEP Predict GO terms from Neighborhoods
    BP GO:0032210 regulation of telomere maintenance via telomerase IEP Predict GO terms from Neighborhoods
    BP GO:0032212 positive regulation of telomere maintenance via telomerase IEP Predict GO terms from Neighborhoods
    BP GO:0032268 regulation of cellular protein metabolic process IEP Predict GO terms from Neighborhoods
    MF GO:0032553 ribonucleotide binding IEP Predict GO terms from Neighborhoods
    MF GO:0032555 purine ribonucleotide binding IEP Predict GO terms from Neighborhoods
    MF GO:0032559 adenyl ribonucleotide binding IEP Predict GO terms from Neighborhoods
    MF GO:0032561 guanyl ribonucleotide binding IEP Predict GO terms from Neighborhoods
    MF GO:0034046 poly(G) binding IEP Predict GO terms from Neighborhoods
    BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
    BP GO:0034471 ncRNA 5'-end processing IEP Predict GO terms from Neighborhoods
    BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
    BP GO:0035036 sperm-egg recognition IEP Predict GO terms from Neighborhoods
    BP GO:0035592 establishment of protein localization to extracellular region IEP Predict GO terms from Neighborhoods
    MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predict GO terms from Neighborhoods
    MF GO:0036094 small molecule binding IEP Predict GO terms from Neighborhoods
    BP GO:0036260 RNA capping IEP Predict GO terms from Neighborhoods
    BP GO:0042254 ribosome biogenesis IEP Predict GO terms from Neighborhoods
    BP GO:0042749 regulation of circadian sleep/wake cycle IEP Predict GO terms from Neighborhoods
    MF GO:0043022 ribosome binding IEP Predict GO terms from Neighborhoods
    MF GO:0043024 ribosomal small subunit binding IEP Predict GO terms from Neighborhoods
    MF GO:0043167 ion binding IEP Predict GO terms from Neighborhoods
    MF GO:0043168 anion binding IEP Predict GO terms from Neighborhoods
    CC GO:0043228 non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
    CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
    BP GO:0043248 proteasome assembly IEP Predict GO terms from Neighborhoods
    BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
    BP GO:0044085 cellular component biogenesis IEP Predict GO terms from Neighborhoods
    MF GO:0044183 protein folding chaperone IEP Predict GO terms from Neighborhoods
    BP GO:0044743 protein transmembrane import into intracellular organelle IEP Predict GO terms from Neighborhoods
    BP GO:0045187 regulation of circadian sleep/wake cycle, sleep IEP Predict GO terms from Neighborhoods
    BP GO:0046483 heterocycle metabolic process IEP Predict GO terms from Neighborhoods
    BP GO:0046626 regulation of insulin receptor signaling pathway IEP Predict GO terms from Neighborhoods
    BP GO:0046628 positive regulation of insulin receptor signaling pathway IEP Predict GO terms from Neighborhoods
    MF GO:0048027 mRNA 5'-UTR binding IEP Predict GO terms from Neighborhoods
    BP GO:0048254 snoRNA localization IEP Predict GO terms from Neighborhoods
    MF GO:0048487 beta-tubulin binding IEP Predict GO terms from Neighborhoods
    BP GO:0048769 sarcomerogenesis IEP Predict GO terms from Neighborhoods
    BP GO:0050795 regulation of behavior IEP Predict GO terms from Neighborhoods
    BP GO:0050821 protein stabilization IEP Predict GO terms from Neighborhoods
    MF GO:0050897 cobalt ion binding IEP Predict GO terms from Neighborhoods
    BP GO:0050900 leukocyte migration IEP Predict GO terms from Neighborhoods
    MF GO:0051082 unfolded protein binding IEP Predict GO terms from Neighborhoods
    MF GO:0051219 phosphoprotein binding IEP Predict GO terms from Neighborhoods
    BP GO:0060176 regulation of aggregation involved in sorocarp development IEP Predict GO terms from Neighborhoods
    BP GO:0060810 intracellular mRNA localization involved in pattern specification process IEP Predict GO terms from Neighborhoods
    BP GO:0060811 intracellular mRNA localization involved in anterior/posterior axis specification IEP Predict GO terms from Neighborhoods
    BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
    MF GO:0070034 telomerase RNA binding IEP Predict GO terms from Neighborhoods
    BP GO:0070125 mitochondrial translational elongation IEP Predict GO terms from Neighborhoods
    BP GO:0070202 regulation of establishment of protein localization to chromosome IEP Predict GO terms from Neighborhoods
    BP GO:0070203 regulation of establishment of protein localization to telomere IEP Predict GO terms from Neighborhoods
    BP GO:0070585 protein localization to mitochondrion IEP Predict GO terms from Neighborhoods
    MF GO:0070717 poly-purine tract binding IEP Predict GO terms from Neighborhoods
    CC GO:0070761 pre-snoRNP complex IEP Predict GO terms from Neighborhoods
    BP GO:0071287 cellular response to manganese ion IEP Predict GO terms from Neighborhoods
    BP GO:0071688 striated muscle myosin thick filament assembly IEP Predict GO terms from Neighborhoods
    BP GO:0071692 protein localization to extracellular region IEP Predict GO terms from Neighborhoods
    BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predict GO terms from Neighborhoods
    BP GO:0072655 establishment of protein localization to mitochondrion IEP Predict GO terms from Neighborhoods
    BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
    BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predict GO terms from Neighborhoods
    BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Predict GO terms from Neighborhoods
    BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP Predict GO terms from Neighborhoods
    MF GO:0097177 mitochondrial ribosome binding IEP Predict GO terms from Neighborhoods
    MF GO:0097367 carbohydrate derivative binding IEP Predict GO terms from Neighborhoods
    CC GO:0098799 outer mitochondrial membrane protein complex IEP Predict GO terms from Neighborhoods
    CC GO:0101031 chaperone complex IEP Predict GO terms from Neighborhoods
    CC GO:0110165 cellular anatomical entity IEP Predict GO terms from Neighborhoods
    CC GO:0120293 dynein axonemal particle IEP Predict GO terms from Neighborhoods
    MF GO:0140098 catalytic activity, acting on RNA IEP Predict GO terms from Neighborhoods
    MF GO:0140318 protein transporter activity IEP Predict GO terms from Neighborhoods
    BP GO:1900076 regulation of cellular response to insulin stimulus IEP Predict GO terms from Neighborhoods
    BP GO:1900078 positive regulation of cellular response to insulin stimulus IEP Predict GO terms from Neighborhoods
    MF GO:1901265 nucleoside phosphate binding IEP Predict GO terms from Neighborhoods
    BP GO:1901360 organic cyclic compound metabolic process IEP Predict GO terms from Neighborhoods
    BP GO:1901998 toxin transport IEP Predict GO terms from Neighborhoods
    BP GO:1904356 regulation of telomere maintenance via telomere lengthening IEP Predict GO terms from Neighborhoods
    BP GO:1904358 positive regulation of telomere maintenance via telomere lengthening IEP Predict GO terms from Neighborhoods
    BP GO:1904814 regulation of protein localization to chromosome, telomeric region IEP Predict GO terms from Neighborhoods
    BP GO:1904816 positive regulation of protein localization to chromosome, telomeric region IEP Predict GO terms from Neighborhoods
    BP GO:1904851 positive regulation of establishment of protein localization to telomere IEP Predict GO terms from Neighborhoods
    BP GO:1904868 telomerase catalytic core complex assembly IEP Predict GO terms from Neighborhoods
    BP GO:1905323 telomerase holoenzyme complex assembly IEP Predict GO terms from Neighborhoods
    MF GO:1990226 histone methyltransferase binding IEP Predict GO terms from Neighborhoods
    BP GO:1990417 snoRNA release from pre-rRNA IEP Predict GO terms from Neighborhoods
    BP GO:2000278 regulation of DNA biosynthetic process IEP Predict GO terms from Neighborhoods
    BP GO:2000573 positive regulation of DNA biosynthetic process IEP Predict GO terms from Neighborhoods
    InterPro domains Description Start Stop
    IPR028364 Ribosomal_L1/biogenesis 184 377
    IPR023674 Ribosomal_L1-like 170 382
    No external refs found!