SOLTUB.AGRIA.G00000039819


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_02_0024978 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000039819
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_8


Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA AHRD
CC GO:0000792 heterochromatin IEA AHRD
BP GO:0001745 compound eye morphogenesis IEA AHRD
MF GO:0003730 mRNA 3'-UTR binding IEA AHRD
CC GO:0005703 polytene chromosome puff IEA AHRD
CC GO:0005829 cytosol IEA AHRD
CC GO:0005844 polysome IEA AHRD
CC GO:0005849 mRNA cleavage factor complex IEA AHRD
BP GO:0006810 transport IEA AHRD
BP GO:0007399 nervous system development IEA AHRD
MF GO:0008266 poly(U) RNA binding IEA AHRD
BP GO:0008584 male gonad development IEA AHRD
BP GO:0008585 female gonad development IEA AHRD
BP GO:0009408 response to heat IEA AHRD
BP GO:0009725 response to hormone IEA AHRD
BP GO:0010228 vegetative to reproductive phase transition of meristem IEA AHRD
BP GO:0010629 negative regulation of gene expression IEA AHRD
BP GO:0019087 transformation of host cell by virus IEA AHRD
BP GO:0030324 lung development IEA AHRD
MF GO:0030371 translation repressor activity IEA AHRD
MF GO:0033592 RNA strand annealing activity IEA AHRD
CC GO:0035062 omega speckle IEA AHRD
BP GO:0035865 cellular response to potassium ion IEA AHRD
MF GO:0036310 ATP-dependent DNA/DNA annealing activity IEA AHRD
BP GO:0042594 response to starvation IEA AHRD
MF GO:0042802 identical protein binding IEA AHRD
CC GO:0043186 P granule IEA AHRD
MF GO:0043565 sequence-specific DNA binding IEA AHRD
BP GO:0045727 positive regulation of translation IEA AHRD
BP GO:0045760 positive regulation of action potential IEA AHRD
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEA AHRD
BP GO:0048864 stem cell development IEA AHRD
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEA AHRD
BP GO:0071364 cellular response to epidermal growth factor stimulus IEA AHRD
BP GO:0072423 response to DNA damage checkpoint signaling IEA AHRD
BP GO:0098789 pre-mRNA cleavage required for polyadenylation IEA AHRD
BP GO:1901000 regulation of response to salt stress IEA AHRD
BP GO:1903688 positive regulation of border follicle cell migration IEA AHRD
BP GO:1904577 obsolete cellular response to tunicamycin IEA AHRD
BP GO:1904579 obsolete cellular response to thapsigargin IEA AHRD
MF GO:1990825 sequence-specific mRNA binding IEA AHRD
CC GO:1990826 nucleoplasmic periphery of the nuclear pore complex IEA AHRD
BP GO:2000070 regulation of response to water deprivation IEA AHRD
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000082 G1/S transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0000911 cytokinesis by cell plate formation IEP Predict GO terms from Neighborhoods
MF GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific IEP Predict GO terms from Neighborhoods
BP GO:0001701 in utero embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0002521 leukocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0002694 regulation of leukocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0002696 positive regulation of leukocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0002699 positive regulation of immune effector process IEP Predict GO terms from Neighborhoods
MF GO:0005451 monovalent cation:proton antiporter activity IEP Predict GO terms from Neighborhoods
BP GO:0007127 meiosis I IEP Predict GO terms from Neighborhoods
BP GO:0007140 male meiotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0007141 male meiosis I IEP Predict GO terms from Neighborhoods
BP GO:0009554 megasporogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010023 proanthocyanidin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010052 guard cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0010162 seed dormancy process IEP Predict GO terms from Neighborhoods
BP GO:0010231 maintenance of seed dormancy IEP Predict GO terms from Neighborhoods
BP GO:0010235 guard mother cell cytokinesis IEP Predict GO terms from Neighborhoods
BP GO:0010376 stomatal complex formation IEP Predict GO terms from Neighborhoods
BP GO:0010444 guard mother cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0010528 regulation of transposition IEP Predict GO terms from Neighborhoods
BP GO:0010529 negative regulation of transposition IEP Predict GO terms from Neighborhoods
MF GO:0015298 solute:cation antiporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015299 solute:proton antiporter activity IEP Predict GO terms from Neighborhoods
BP GO:0017145 stem cell division IEP Predict GO terms from Neighborhoods
BP GO:0022407 regulation of cell-cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0022409 positive regulation of cell-cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0030098 lymphocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0030099 myeloid cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0030183 B cell differentiation IEP Predict GO terms from Neighborhoods
CC GO:0031523 Myb complex IEP Predict GO terms from Neighborhoods
BP GO:0032875 regulation of DNA endoreduplication IEP Predict GO terms from Neighborhoods
BP GO:0034587 piRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042113 B cell activation IEP Predict GO terms from Neighborhoods
BP GO:0043370 regulation of CD4-positive, alpha-beta T cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0043372 positive regulation of CD4-positive, alpha-beta T cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0044843 cell cycle G1/S phase transition IEP Predict GO terms from Neighborhoods
BP GO:0045580 regulation of T cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045582 positive regulation of T cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045619 regulation of lymphocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045621 positive regulation of lymphocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045622 regulation of T-helper cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045624 positive regulation of T-helper cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045785 positive regulation of cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0046618 xenobiotic export from cell IEP Predict GO terms from Neighborhoods
BP GO:0046634 regulation of alpha-beta T cell activation IEP Predict GO terms from Neighborhoods
BP GO:0046635 positive regulation of alpha-beta T cell activation IEP Predict GO terms from Neighborhoods
BP GO:0046637 regulation of alpha-beta T cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0046638 positive regulation of alpha-beta T cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0048536 spleen development IEP Predict GO terms from Neighborhoods
BP GO:0048538 thymus development IEP Predict GO terms from Neighborhoods
BP GO:0048565 digestive tract development IEP Predict GO terms from Neighborhoods
BP GO:0048566 embryonic digestive tract development IEP Predict GO terms from Neighborhoods
BP GO:0048568 embryonic organ development IEP Predict GO terms from Neighborhoods
BP GO:0048871 multicellular organismal homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0048872 homeostasis of number of cells IEP Predict GO terms from Neighborhoods
BP GO:0050863 regulation of T cell activation IEP Predict GO terms from Neighborhoods
BP GO:0050867 positive regulation of cell activation IEP Predict GO terms from Neighborhoods
BP GO:0050870 positive regulation of T cell activation IEP Predict GO terms from Neighborhoods
BP GO:0050878 regulation of body fluid levels IEP Predict GO terms from Neighborhoods
BP GO:0050891 multicellular organismal water homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0051249 regulation of lymphocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0051251 positive regulation of lymphocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0051569 regulation of histone H3-K4 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051570 regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051571 positive regulation of histone H3-K4 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051574 positive regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
BP GO:0061085 regulation of histone H3-K27 methylation IEP Predict GO terms from Neighborhoods
BP GO:0061087 positive regulation of histone H3-K27 methylation IEP Predict GO terms from Neighborhoods
BP GO:0061982 meiosis I cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0070741 response to interleukin-6 IEP Predict GO terms from Neighborhoods
BP GO:0071354 cellular response to interleukin-6 IEP Predict GO terms from Neighborhoods
MF GO:0071987 WD40-repeat domain binding IEP Predict GO terms from Neighborhoods
BP GO:0090307 mitotic spindle assembly IEP Predict GO terms from Neighborhoods
BP GO:0090329 regulation of DNA-templated DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0090436 leaf pavement cell development IEP Predict GO terms from Neighborhoods
BP GO:0097437 maintenance of dormancy IEP Predict GO terms from Neighborhoods
BP GO:1901216 positive regulation of neuron death IEP Predict GO terms from Neighborhoods
BP GO:1901333 positive regulation of lateral root development IEP Predict GO terms from Neighborhoods
BP GO:1901532 regulation of hematopoietic progenitor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1901533 negative regulation of hematopoietic progenitor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1902105 regulation of leukocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:1902107 positive regulation of leukocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:1902806 regulation of cell cycle G1/S phase transition IEP Predict GO terms from Neighborhoods
BP GO:1903037 regulation of leukocyte cell-cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:1903039 positive regulation of leukocyte cell-cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:1903131 mononuclear cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1903708 positive regulation of hemopoiesis IEP Predict GO terms from Neighborhoods
BP GO:1990511 piRNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1990823 response to leukemia inhibitory factor IEP Predict GO terms from Neighborhoods
BP GO:1990830 cellular response to leukemia inhibitory factor IEP Predict GO terms from Neighborhoods
BP GO:1990961 xenobiotic detoxification by transmembrane export across the plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:2000037 regulation of stomatal complex patterning IEP Predict GO terms from Neighborhoods
BP GO:2000514 regulation of CD4-positive, alpha-beta T cell activation IEP Predict GO terms from Neighborhoods
BP GO:2000516 positive regulation of CD4-positive, alpha-beta T cell activation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR035979 RBD_domain_sf 12 133
IPR000504 RRM_dom 15 76
No external refs found!