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  5. SOLTUB.AGRIA.G00000040302

SOLTUB.AGRIA.G00000040302


Description : Tropomyosin GRF zinc finger protein


Gene families : OG_02_0000054 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000040302
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_33


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA AHRD
MF GO:0003824 catalytic activity IEA AHRD
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEA AHRD
MF GO:0004518 nuclease activity IEA AHRD
MF GO:0004519 endonuclease activity IEA AHRD
MF GO:0004528 phosphodiesterase I activity IEA AHRD
CC GO:0005634 nucleus IEA AHRD
BP GO:0006281 DNA repair IEA AHRD
BP GO:0006284 base-excision repair IEA AHRD
BP GO:0006974 cellular response to DNA damage stimulus IEA AHRD
MF GO:0008081 phosphoric diester hydrolase activity IEA AHRD
MF GO:0008270 zinc ion binding IEA AHRD
MF GO:0008311 double-stranded DNA 3'-5' exodeoxyribonuclease activity IEA AHRD
MF GO:0008408 3'-5' exonuclease activity IEA AHRD
MF GO:0016787 hydrolase activity IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEA AHRD
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Type GO Term Name Evidence Source
CC GO:0005769 early endosome IEP Predict GO terms from Neighborhoods
BP GO:0006497 protein lipidation IEP Predict GO terms from Neighborhoods
BP GO:0006505 GPI anchor metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006506 GPI anchor biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006643 membrane lipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006650 glycerophospholipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006664 glycolipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006665 sphingolipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0008654 phospholipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009247 glycolipid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0015693 magnesium ion transport IEP Predict GO terms from Neighborhoods
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predict GO terms from Neighborhoods
MF GO:0043531 ADP binding IEP Predict GO terms from Neighborhoods
BP GO:0045017 glycerolipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046467 membrane lipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046486 glycerolipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046488 phosphatidylinositol metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0046873 metal ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0051607 defense response to virus IEP Predict GO terms from Neighborhoods
BP GO:0140546 defense response to symbiont IEP Predict GO terms from Neighborhoods
BP GO:1903509 liposaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903830 magnesium ion transmembrane transport IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR010666 Znf_GRF 13 54
No external refs found!