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Description : Pentatricopeptide repeat-containing protein
Gene families : OG_02_0021790 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000004047 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_144 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0003002 | regionalization | None | Extended |
| BP | GO:0003006 | developmental process involved in reproduction | None | Extended |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003676 | nucleic acid binding | None | Extended |
| MF | GO:0003723 | RNA binding | None | Extended |
| MF | GO:0003729 | mRNA binding | IEA | AHRD |
| MF | GO:0005488 | binding | None | Extended |
| CC | GO:0005575 | cellular_component | None | Extended |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | None | Extended |
| BP | GO:0006396 | RNA processing | None | Extended |
| BP | GO:0006725 | cellular aromatic compound metabolic process | None | Extended |
| BP | GO:0006807 | nitrogen compound metabolic process | None | Extended |
| BP | GO:0007389 | pattern specification process | None | Extended |
| BP | GO:0008150 | biological_process | None | Extended |
| BP | GO:0008152 | metabolic process | None | Extended |
| BP | GO:0009451 | RNA modification | None | Extended |
| CC | GO:0009507 | chloroplast | IEA | AHRD |
| CC | GO:0009536 | plastid | None | Extended |
| BP | GO:0009653 | anatomical structure morphogenesis | None | Extended |
| BP | GO:0009888 | tissue development | None | Extended |
| BP | GO:0009987 | cellular process | None | Extended |
| BP | GO:0010015 | root morphogenesis | None | Extended |
| BP | GO:0010051 | xylem and phloem pattern formation | None | Extended |
| BP | GO:0010087 | phloem or xylem histogenesis | IEA | AHRD |
| BP | GO:0010101 | post-embryonic root morphogenesis | None | Extended |
| BP | GO:0010102 | lateral root morphogenesis | IEA | AHRD |
| BP | GO:0010214 | seed coat development | IEA | AHRD |
| BP | GO:0010305 | leaf vascular tissue pattern formation | IEA | AHRD |
| BP | GO:0010588 | cotyledon vascular tissue pattern formation | IEA | AHRD |
| BP | GO:0016070 | RNA metabolic process | None | Extended |
| BP | GO:0016071 | mRNA metabolic process | None | Extended |
| BP | GO:0016556 | mRNA modification | IEA | AHRD |
| BP | GO:0022414 | reproductive process | None | Extended |
| BP | GO:0031425 | chloroplast RNA processing | IEA | AHRD |
| BP | GO:0032501 | multicellular organismal process | None | Extended |
| BP | GO:0032502 | developmental process | None | Extended |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | None | Extended |
| BP | GO:0043170 | macromolecule metabolic process | None | Extended |
| CC | GO:0043226 | organelle | None | Extended |
| CC | GO:0043227 | membrane-bounded organelle | None | Extended |
| CC | GO:0043229 | intracellular organelle | None | Extended |
| CC | GO:0043231 | intracellular membrane-bounded organelle | None | Extended |
| BP | GO:0043412 | macromolecule modification | None | Extended |
| BP | GO:0044237 | cellular metabolic process | None | Extended |
| BP | GO:0044238 | primary metabolic process | None | Extended |
| BP | GO:0046483 | heterocycle metabolic process | None | Extended |
| BP | GO:0048856 | anatomical structure development | None | Extended |
| BP | GO:0071704 | organic substance metabolic process | None | Extended |
| BP | GO:0090304 | nucleic acid metabolic process | None | Extended |
| BP | GO:0090697 | post-embryonic plant organ morphogenesis | None | Extended |
| BP | GO:0090698 | post-embryonic plant morphogenesis | None | Extended |
| MF | GO:0097159 | organic cyclic compound binding | None | Extended |
| CC | GO:0110165 | cellular anatomical entity | None | Extended |
| BP | GO:0140547 | acquisition of seed longevity | IEA | AHRD |
| BP | GO:1900865 | chloroplast RNA modification | IEA | AHRD |
| BP | GO:1901360 | organic cyclic compound metabolic process | None | Extended |
| MF | GO:1901363 | heterocyclic compound binding | None | Extended |
| BP | GO:1905392 | plant organ morphogenesis | None | Extended |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0009738 | abscisic acid-activated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0050285 | sinapine esterase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | Predict GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 118 | 147 |
| IPR002885 | Pentatricopeptide_repeat | 323 | 351 |
| IPR002885 | Pentatricopeptide_repeat | 293 | 313 |
| IPR002885 | Pentatricopeptide_repeat | 220 | 246 |
| IPR002885 | Pentatricopeptide_repeat | 87 | 114 |
| IPR002885 | Pentatricopeptide_repeat | 394 | 418 |
| IPR002885 | Pentatricopeptide_repeat | 192 | 218 |
| IPR002885 | Pentatricopeptide_repeat | 422 | 455 |
| IPR002885 | Pentatricopeptide_repeat | 87 | 115 |
| IPR002885 | Pentatricopeptide_repeat | 324 | 354 |
| IPR002885 | Pentatricopeptide_repeat | 420 | 467 |
| No external refs found! |
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