SOLTUB.AGRIA.G00000040924


Description : H/ACA ribonucleoprotein complex subunit 2-like protein


Gene families : OG_02_0017575 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000040924
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_37


Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEA AHRD
BP GO:0000470 maturation of LSU-rRNA IEA AHRD
BP GO:0000493 box H/ACA snoRNP assembly IEA AHRD
MF GO:0003729 mRNA binding IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005697 telomerase holoenzyme complex IEA AHRD
BP GO:0007004 telomere maintenance via telomerase IEA AHRD
BP GO:0031118 rRNA pseudouridine synthesis IEA AHRD
BP GO:0031120 snRNA pseudouridine synthesis IEA AHRD
CC GO:0031429 box H/ACA snoRNP complex IEA AHRD
MF GO:0034513 box H/ACA snoRNA binding IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IEP Predict GO terms from Neighborhoods
MF GO:0000175 3'-5'-exoribonuclease activity IEP Predict GO terms from Neighborhoods
CC GO:0000176 nuclear exosome (RNase complex) IEP Predict GO terms from Neighborhoods
CC GO:0000177 cytoplasmic exosome (RNase complex) IEP Predict GO terms from Neighborhoods
CC GO:0000178 exosome (RNase complex) IEP Predict GO terms from Neighborhoods
MF GO:0000215 tRNA 2'-phosphotransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic IEP Predict GO terms from Neighborhoods
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predict GO terms from Neighborhoods
CC GO:0000418 RNA polymerase IV complex IEP Predict GO terms from Neighborhoods
CC GO:0000419 RNA polymerase V complex IEP Predict GO terms from Neighborhoods
BP GO:0000460 maturation of 5.8S rRNA IEP Predict GO terms from Neighborhoods
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
CC GO:0000785 chromatin IEP Predict GO terms from Neighborhoods
MF GO:0000993 RNA polymerase II complex binding IEP Predict GO terms from Neighborhoods
MF GO:0001098 basal transcription machinery binding IEP Predict GO terms from Neighborhoods
MF GO:0001099 basal RNA polymerase II transcription machinery binding IEP Predict GO terms from Neighborhoods
CC GO:0001650 fibrillar center IEP Predict GO terms from Neighborhoods
BP GO:0001731 formation of translation preinitiation complex IEP Predict GO terms from Neighborhoods
BP GO:0001824 blastocyst development IEP Predict GO terms from Neighborhoods
BP GO:0001889 liver development IEP Predict GO terms from Neighborhoods
BP GO:0001932 regulation of protein phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0002181 cytoplasmic translation IEP Predict GO terms from Neighborhoods
MF GO:0003735 structural constituent of ribosome IEP Predict GO terms from Neighborhoods
MF GO:0003746 translation elongation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predict GO terms from Neighborhoods
MF GO:0004532 exoribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0005198 structural molecule activity IEP Predict GO terms from Neighborhoods
CC GO:0005618 cell wall IEP Predict GO terms from Neighborhoods
CC GO:0005654 nucleoplasm IEP Predict GO terms from Neighborhoods
CC GO:0005665 RNA polymerase II, core complex IEP Predict GO terms from Neighborhoods
CC GO:0005703 polytene chromosome puff IEP Predict GO terms from Neighborhoods
CC GO:0005705 polytene chromosome interband IEP Predict GO terms from Neighborhoods
CC GO:0005730 nucleolus IEP Predict GO terms from Neighborhoods
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Predict GO terms from Neighborhoods
CC GO:0005774 vacuolar membrane IEP Predict GO terms from Neighborhoods
CC GO:0005791 rough endoplasmic reticulum IEP Predict GO terms from Neighborhoods
CC GO:0005840 ribosome IEP Predict GO terms from Neighborhoods
CC GO:0005911 cell-cell junction IEP Predict GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Predict GO terms from Neighborhoods
BP GO:0006337 nucleosome disassembly IEP Predict GO terms from Neighborhoods
BP GO:0006366 transcription by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0006383 transcription by RNA polymerase III IEP Predict GO terms from Neighborhoods
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predict GO terms from Neighborhoods
BP GO:0006407 rRNA export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0006412 translation IEP Predict GO terms from Neighborhoods
BP GO:0006413 translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0006417 regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0006448 regulation of translational elongation IEP Predict GO terms from Neighborhoods
BP GO:0006449 regulation of translational termination IEP Predict GO terms from Neighborhoods
BP GO:0006450 regulation of translational fidelity IEP Predict GO terms from Neighborhoods
BP GO:0006518 peptide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006839 mitochondrial transport IEP Predict GO terms from Neighborhoods
BP GO:0006977 DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest IEP Predict GO terms from Neighborhoods
CC GO:0008023 transcription elongation factor complex IEP Predict GO terms from Neighborhoods
MF GO:0008320 protein transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0008334 histone mRNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0008408 3'-5' exonuclease activity IEP Predict GO terms from Neighborhoods
CC GO:0009506 plasmodesma IEP Predict GO terms from Neighborhoods
BP GO:0009891 positive regulation of biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010374 stomatal complex development IEP Predict GO terms from Neighborhoods
BP GO:0010375 stomatal complex patterning IEP Predict GO terms from Neighborhoods
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010608 post-transcriptional regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010628 positive regulation of gene expression IEP Predict GO terms from Neighborhoods
CC GO:0015934 large ribosomal subunit IEP Predict GO terms from Neighborhoods
CC GO:0015935 small ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0016074 sno(s)RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016075 rRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016180 snRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0016444 somatic cell DNA recombination IEP Predict GO terms from Neighborhoods
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP Predict GO terms from Neighborhoods
MF GO:0017134 fibroblast growth factor binding IEP Predict GO terms from Neighborhoods
BP GO:0019538 protein metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0019838 growth factor binding IEP Predict GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predict GO terms from Neighborhoods
CC GO:0022625 cytosolic large ribosomal subunit IEP Predict GO terms from Neighborhoods
CC GO:0022627 cytosolic small ribosomal subunit IEP Predict GO terms from Neighborhoods
MF GO:0022884 macromolecule transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0030054 cell junction IEP Predict GO terms from Neighborhoods
BP GO:0030150 protein import into mitochondrial matrix IEP Predict GO terms from Neighborhoods
BP GO:0030218 erythrocyte differentiation IEP Predict GO terms from Neighborhoods
CC GO:0030312 external encapsulating structure IEP Predict GO terms from Neighborhoods
BP GO:0030330 DNA damage response, signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:0030490 maturation of SSU-rRNA IEP Predict GO terms from Neighborhoods
CC GO:0030684 preribosome IEP Predict GO terms from Neighborhoods
CC GO:0030687 preribosome, large subunit precursor IEP Predict GO terms from Neighborhoods
BP GO:0031099 regeneration IEP Predict GO terms from Neighborhoods
BP GO:0031100 animal organ regeneration IEP Predict GO terms from Neighborhoods
BP GO:0031126 sno(s)RNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0031399 regulation of protein modification process IEP Predict GO terms from Neighborhoods
CC GO:0031428 box C/D RNP complex IEP Predict GO terms from Neighborhoods
BP GO:0031571 mitotic G1 DNA damage checkpoint signaling IEP Predict GO terms from Neighborhoods
CC GO:0032040 small-subunit processome IEP Predict GO terms from Neighborhoods
CC GO:0032044 DSIF complex IEP Predict GO terms from Neighborhoods
BP GO:0032785 negative regulation of DNA-templated transcription, elongation IEP Predict GO terms from Neighborhoods
BP GO:0032986 protein-DNA complex disassembly IEP Predict GO terms from Neighborhoods
BP GO:0034244 negative regulation of transcription elongation by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0034248 regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' IEP Predict GO terms from Neighborhoods
BP GO:0034472 snRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0034475 U4 snRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034661 ncRNA catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0035925 mRNA 3'-UTR AU-rich region binding IEP Predict GO terms from Neighborhoods
BP GO:0042273 ribosomal large subunit biogenesis IEP Predict GO terms from Neighborhoods
CC GO:0042788 polysomal ribosome IEP Predict GO terms from Neighborhoods
BP GO:0043043 peptide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0043144 sno(s)RNA processing IEP Predict GO terms from Neighborhoods
MF GO:0043175 RNA polymerase core enzyme binding IEP Predict GO terms from Neighborhoods
CC GO:0043195 terminal bouton IEP Predict GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Predict GO terms from Neighborhoods
BP GO:0043516 regulation of DNA damage response, signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:0043517 positive regulation of DNA damage response, signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:0043549 regulation of kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0043603 cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043604 amide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0043628 small regulatory ncRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0044085 cellular component biogenesis IEP Predict GO terms from Neighborhoods
CC GO:0044391 ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Predict GO terms from Neighborhoods
BP GO:0044773 mitotic DNA damage checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0044819 mitotic G1/S transition checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0045006 DNA deamination IEP Predict GO terms from Neighborhoods
CC GO:0045202 synapse IEP Predict GO terms from Neighborhoods
BP GO:0045446 endothelial cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045727 positive regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0045859 regulation of protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0045901 positive regulation of translational elongation IEP Predict GO terms from Neighborhoods
BP GO:0045903 positive regulation of translational fidelity IEP Predict GO terms from Neighborhoods
BP GO:0045905 positive regulation of translational termination IEP Predict GO terms from Neighborhoods
MF GO:0048027 mRNA 5'-UTR binding IEP Predict GO terms from Neighborhoods
BP GO:0048732 gland development IEP Predict GO terms from Neighborhoods
BP GO:0050790 regulation of catalytic activity IEP Predict GO terms from Neighborhoods
BP GO:0051029 rRNA transport IEP Predict GO terms from Neighborhoods
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051246 regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051247 positive regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051338 regulation of transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051385 response to mineralocorticoid IEP Predict GO terms from Neighborhoods
BP GO:0051438 regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051443 positive regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051649 establishment of localization in cell IEP Predict GO terms from Neighborhoods
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0060255 regulation of macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0060348 bone development IEP Predict GO terms from Neighborhoods
BP GO:0065002 intracellular protein transmembrane transport IEP Predict GO terms from Neighborhoods
MF GO:0070063 RNA polymerase binding IEP Predict GO terms from Neighborhoods
CC GO:0070161 anchoring junction IEP Predict GO terms from Neighborhoods
MF GO:0070181 small ribosomal subunit rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0070585 protein localization to mitochondrion IEP Predict GO terms from Neighborhoods
BP GO:0070670 response to interleukin-4 IEP Predict GO terms from Neighborhoods
CC GO:0070761 pre-snoRNP complex IEP Predict GO terms from Neighborhoods
BP GO:0071025 RNA surveillance IEP Predict GO terms from Neighborhoods
BP GO:0071027 nuclear RNA surveillance IEP Predict GO terms from Neighborhoods
BP GO:0071028 nuclear mRNA surveillance IEP Predict GO terms from Neighborhoods
BP GO:0071044 histone mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0071051 polyadenylation-dependent snoRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0071353 cellular response to interleukin-4 IEP Predict GO terms from Neighborhoods
BP GO:0071479 cellular response to ionizing radiation IEP Predict GO terms from Neighborhoods
BP GO:0071480 cellular response to gamma radiation IEP Predict GO terms from Neighborhoods
BP GO:0071806 protein transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0072331 signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:0072594 establishment of protein localization to organelle IEP Predict GO terms from Neighborhoods
BP GO:0072655 establishment of protein localization to mitochondrion IEP Predict GO terms from Neighborhoods
BP GO:0097064 ncRNA export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0097421 liver regeneration IEP Predict GO terms from Neighborhoods
CC GO:0098799 outer mitochondrial membrane protein complex IEP Predict GO terms from Neighborhoods
CC GO:0110165 cellular anatomical entity IEP Predict GO terms from Neighborhoods
MF GO:0140098 catalytic activity, acting on RNA IEP Predict GO terms from Neighborhoods
MF GO:0140318 protein transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Predict GO terms from Neighborhoods
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901798 positive regulation of signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902162 regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902164 positive regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902165 regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902167 positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902229 regulation of intrinsic apoptotic signaling pathway in response to DNA damage IEP Predict GO terms from Neighborhoods
BP GO:1902231 positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage IEP Predict GO terms from Neighborhoods
BP GO:1902253 regulation of intrinsic apoptotic signaling pathway by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902255 positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902807 negative regulation of cell cycle G1/S phase transition IEP Predict GO terms from Neighborhoods
BP GO:1904044 response to aldosterone IEP Predict GO terms from Neighborhoods
BP GO:1904803 regulation of translation involved in cellular response to UV IEP Predict GO terms from Neighborhoods
CC GO:1905354 exoribonuclease complex IEP Predict GO terms from Neighborhoods
BP GO:1990089 response to nerve growth factor IEP Predict GO terms from Neighborhoods
BP GO:1990090 cellular response to nerve growth factor stimulus IEP Predict GO terms from Neighborhoods
MF GO:1990226 histone methyltransferase binding IEP Predict GO terms from Neighborhoods
BP GO:1990542 mitochondrial transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1990928 response to amino acid starvation IEP Predict GO terms from Neighborhoods
MF GO:1990932 5.8S rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000134 negative regulation of G1/S transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:2001022 positive regulation of response to DNA damage stimulus IEP Predict GO terms from Neighborhoods
BP GO:2001235 positive regulation of apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001244 positive regulation of intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR029064 L30e-like 16 131
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 36 122
No external refs found!