SOLTUB.AGRIA.G00000041037

Description : Non-structural maintenance of chromosomes element 4-like a

Gene families : OG_02_0024945 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000041037
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_46

Type	GO Term	Name	Evidence	Source
CC	GO:0000785	chromatin	None	Extended
CC	GO:0000791	euchromatin	IEA	AHRD
CC	GO:0000792	heterochromatin	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0098687	chromosomal region	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005681	spliceosomal complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006521	regulation of cellular amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006972	hyperosmotic response	IEP	Predict GO terms from Neighborhoods
BP	GO:0007623	circadian rhythm	IEP	Predict GO terms from Neighborhoods
MF	GO:0008134	transcription factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0009267	cellular response to starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009269	response to desiccation	IEP	Predict GO terms from Neighborhoods
CC	GO:0009526	plastid envelope	IEP	Predict GO terms from Neighborhoods
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009753	response to jasmonic acid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009792	embryo development ending in birth or egg hatching	IEP	Predict GO terms from Neighborhoods
BP	GO:0009812	flavonoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009813	flavonoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009941	chloroplast envelope	IEP	Predict GO terms from Neighborhoods
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010033	response to organic substance	IEP	Predict GO terms from Neighborhoods
BP	GO:0010200	response to chitin	IEP	Predict GO terms from Neighborhoods
BP	GO:0010243	response to organonitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:0010374	stomatal complex development	IEP	Predict GO terms from Neighborhoods
CC	GO:0010445	nuclear dicing body	IEP	Predict GO terms from Neighborhoods
BP	GO:0010468	regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0014074	response to purine-containing compound	IEP	Predict GO terms from Neighborhoods
BP	GO:0016036	cellular response to phosphate starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0016604	nuclear body	IEP	Predict GO terms from Neighborhoods
CC	GO:0016607	nuclear speck	IEP	Predict GO terms from Neighborhoods
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019222	regulation of metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019900	kinase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031053	primary miRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031323	regulation of cellular metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031669	cellular response to nutrient levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0032501	multicellular organismal process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033198	response to ATP	IEP	Predict GO terms from Neighborhoods
BP	GO:0033238	regulation of cellular amine metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0035061	interchromatin granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0035196	miRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0042440	pigment metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042538	hyperosmotic salinity response	IEP	Predict GO terms from Neighborhoods
BP	GO:0042594	response to starvation	IEP	Predict GO terms from Neighborhoods
MF	GO:0043425	bHLH transcription factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043484	regulation of RNA splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0043618	regulation of transcription from RNA polymerase II promoter in response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0043619	regulation of transcription from RNA polymerase II promoter in response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0043620	regulation of DNA-templated transcription in response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0044087	regulation of cellular component biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0046148	pigment biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046283	anthocyanin-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046683	response to organophosphorus	IEP	Predict GO terms from Neighborhoods
BP	GO:0048024	regulation of mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0048468	cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048511	rhythmic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048519	negative regulation of biological process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048869	cellular developmental process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050684	regulation of mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0051090	regulation of DNA-binding transcription factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051252	regulation of RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051259	protein complex oligomerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051260	protein homooligomerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051262	protein tetramerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051289	protein homotetramerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0062012	regulation of small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070542	response to fatty acid	IEP	Predict GO terms from Neighborhoods
BP	GO:0070918	small regulatory ncRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0071318	cellular response to ATP	IEP	Predict GO terms from Neighborhoods
BP	GO:0071407	cellular response to organic cyclic compound	IEP	Predict GO terms from Neighborhoods
BP	GO:0071417	cellular response to organonitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0080090	regulation of primary metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0080147	root hair cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0090357	regulation of tryptophan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090558	plant epidermis development	IEP	Predict GO terms from Neighborhoods
BP	GO:0106167	extracellular ATP signaling	IEP	Predict GO terms from Neighborhoods
MF	GO:0140297	DNA-binding transcription factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1901698	response to nitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:1901699	cellular response to nitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:1903311	regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903338	regulation of cell wall organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:2000068	regulation of defense response to insect	IEP	Predict GO terms from Neighborhoods
BP	GO:2000652	regulation of secondary cell wall biogenesis	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR014854	Nse4_C	205	289

External Links

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SOLTUB.AGRIA.G00000041037

Expression Profile

Co-expression Networks

Functional Annotation