SOLTUB.AGRIA.G00000041764

Description : Calcium-binding EF-hand

Gene families : OG_02_0001031 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000041764
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_142

Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEA	AHRD
BP	GO:0000302	response to reactive oxygen species	None	Extended
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
MF	GO:0001664	G protein-coupled receptor binding	None	Extended
BP	GO:0001666	response to hypoxia	None	Extended
BP	GO:0002376	immune system process	None	Extended
BP	GO:0003008	system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0004857	enzyme inhibitor activity	IEA	AHRD
MF	GO:0005048	signal sequence binding	None	Extended
MF	GO:0005102	signaling receptor binding	None	Extended
MF	GO:0005246	calcium channel regulator activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	IEA	AHRD
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005615	extracellular space	IEA	AHRD
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005737	cytoplasm	IEA	AHRD
CC	GO:0005794	Golgi apparatus	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005856	cytoskeleton	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
CC	GO:0005938	cell cortex	IEA	AHRD
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0006979	response to oxidative stress	None	Extended
BP	GO:0007165	signal transduction	IEA	AHRD
BP	GO:0007600	sensory perception	None	Extended
BP	GO:0007601	visual perception	IEA	AHRD
BP	GO:0007602	phototransduction	IEA	AHRD
MF	GO:0008139	nuclear localization sequence binding	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008594	photoreceptor cell morphogenesis	IEA	AHRD
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009408	response to heat	IEA	AHRD
BP	GO:0009409	response to cold	IEA	AHRD
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009612	response to mechanical stimulus	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009642	response to light intensity	None	Extended
BP	GO:0009646	response to absence of light	IEA	AHRD
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	IEA	AHRD
BP	GO:0009737	response to abscisic acid	IEA	AHRD
CC	GO:0009898	cytoplasmic side of plasma membrane	IEA	AHRD
BP	GO:0009909	regulation of flower development	IEA	AHRD
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	IEA	AHRD
BP	GO:0010193	response to ozone	IEA	AHRD
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010648	negative regulation of cell communication	None	Extended
BP	GO:0010649	regulation of cell communication by electrical coupling	None	Extended
BP	GO:0010651	negative regulation of cell communication by electrical coupling	IEA	AHRD
BP	GO:0010959	regulation of metal ion transport	None	Extended
CC	GO:0014069	postsynaptic density	IEA	AHRD
CC	GO:0015629	actin cytoskeleton	IEA	AHRD
CC	GO:0016020	membrane	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016247	channel regulator activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0019904	protein domain specific binding	IEA	AHRD
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022898	regulation of transmembrane transporter activity	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
CC	GO:0030054	cell junction	IEA	AHRD
CC	GO:0030141	secretory granule	IEA	AHRD
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030182	neuron differentiation	None	Extended
MF	GO:0030234	enzyme regulator activity	IEA	AHRD
CC	GO:0030424	axon	IEA	AHRD
CC	GO:0030425	dendrite	IEA	AHRD
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
MF	GO:0031800	type 3 metabotropic glutamate receptor binding	IEA	AHRD
CC	GO:0031982	vesicle	None	Extended
BP	GO:0032386	regulation of intracellular transport	None	Extended
BP	GO:0032387	negative regulation of intracellular transport	None	Extended
BP	GO:0032409	regulation of transporter activity	None	Extended
BP	GO:0032410	negative regulation of transporter activity	None	Extended
BP	GO:0032412	regulation of ion transmembrane transporter activity	None	Extended
BP	GO:0032413	negative regulation of ion transmembrane transporter activity	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	None	Extended
CC	GO:0032991	protein-containing complex	IEA	AHRD
BP	GO:0033157	regulation of intracellular protein transport	None	Extended
MF	GO:0033218	amide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0034330	cell junction organization	None	Extended
BP	GO:0034762	regulation of transmembrane transport	None	Extended
BP	GO:0034763	negative regulation of transmembrane transport	None	Extended
BP	GO:0034765	regulation of ion transmembrane transport	None	Extended
BP	GO:0034766	negative regulation of ion transmembrane transport	None	Extended
MF	GO:0035254	glutamate receptor binding	None	Extended
MF	GO:0035256	G protein-coupled glutamate receptor binding	None	Extended
BP	GO:0036293	response to decreased oxygen levels	None	Extended
BP	GO:0036294	cellular response to decreased oxygen levels	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0042277	peptide binding	None	Extended
BP	GO:0042306	regulation of protein import into nucleus	None	Extended
BP	GO:0042308	negative regulation of protein import into nucleus	IEA	AHRD
BP	GO:0042461	photoreceptor cell development	None	Extended
BP	GO:0042462	eye photoreceptor cell development	None	Extended
BP	GO:0042542	response to hydrogen peroxide	IEA	AHRD
MF	GO:0042802	identical protein binding	IEA	AHRD
CC	GO:0042995	cell projection	IEA	AHRD
CC	GO:0043005	neuron projection	None	Extended
CC	GO:0043025	neuronal cell body	IEA	AHRD
BP	GO:0043086	negative regulation of catalytic activity	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043269	regulation of ion transport	None	Extended
BP	GO:0043271	negative regulation of ion transport	None	Extended
BP	GO:0044092	negative regulation of molecular function	None	Extended
CC	GO:0044280	subplasmalemmal coating	IEA	AHRD
CC	GO:0044297	cell body	None	Extended
MF	GO:0044325	transmembrane transporter binding	IEA	AHRD
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045087	innate immune response	IEA	AHRD
CC	GO:0045202	synapse	IEA	AHRD
BP	GO:0046549	retinal cone cell development	IEA	AHRD
BP	GO:0046822	regulation of nucleocytoplasmic transport	None	Extended
BP	GO:0046823	negative regulation of nucleocytoplasmic transport	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0048167	regulation of synaptic plasticity	IEA	AHRD
MF	GO:0048306	calcium-dependent protein binding	IEA	AHRD
BP	GO:0048468	cell development	None	Extended
CC	GO:0048471	perinuclear region of cytoplasm	IEA	AHRD
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048571	long-day photoperiodism	None	Extended
BP	GO:0048573	photoperiodism, flowering	None	Extended
BP	GO:0048574	long-day photoperiodism, flowering	IEA	AHRD
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048666	neuron development	None	Extended
BP	GO:0048667	cell morphogenesis involved in neuron differentiation	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	IEA	AHRD
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050804	modulation of chemical synaptic transmission	None	Extended
BP	GO:0050808	synapse organization	None	Extended
BP	GO:0050877	nervous system process	None	Extended
BP	GO:0050896	response to stimulus	IEA	AHRD
BP	GO:0050953	sensory perception of light stimulus	None	Extended
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051051	negative regulation of transport	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051223	regulation of protein transport	None	Extended
BP	GO:0051224	negative regulation of protein transport	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051592	response to calcium ion	IEA	AHRD
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051924	regulation of calcium ion transport	None	Extended
BP	GO:0051926	negative regulation of calcium ion transport	None	Extended
BP	GO:0060040	retinal bipolar neuron differentiation	IEA	AHRD
BP	GO:0060341	regulation of cellular localization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0070201	regulation of establishment of protein localization	None	Extended
BP	GO:0070482	response to oxygen levels	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071453	cellular response to oxygen levels	None	Extended
BP	GO:0071456	cellular response to hypoxia	IEA	AHRD
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080164	regulation of nitric oxide metabolic process	IEA	AHRD
BP	GO:0090317	negative regulation of intracellular protein transport	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0098552	side of membrane	None	Extended
CC	GO:0098562	cytoplasmic side of membrane	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0098793	presynapse	IEA	AHRD
BP	GO:0098885	modification of postsynaptic actin cytoskeleton	IEA	AHRD
BP	GO:0098926	postsynaptic signal transduction	None	Extended
CC	GO:0098978	glutamatergic synapse	IEA	AHRD
BP	GO:0099010	modification of postsynaptic structure	None	Extended
MF	GO:0099106	ion channel regulator activity	None	Extended
BP	GO:0099177	regulation of trans-synaptic signaling	None	Extended
CC	GO:0099503	secretory vesicle	None	Extended
BP	GO:0099527	postsynapse to nucleus signaling pathway	IEA	AHRD
BP	GO:0099563	modification of synaptic structure	None	Extended
CC	GO:0099572	postsynaptic specialization	None	Extended
CC	GO:0099573	glutamatergic postsynaptic density	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended
BP	GO:1900180	regulation of protein localization to nucleus	None	Extended
BP	GO:1900181	negative regulation of protein localization to nucleus	None	Extended
BP	GO:1901019	regulation of calcium ion transmembrane transporter activity	None	Extended
BP	GO:1901020	negative regulation of calcium ion transmembrane transporter activity	None	Extended
BP	GO:1901385	regulation of voltage-gated calcium channel activity	IEA	AHRD
BP	GO:1901386	negative regulation of voltage-gated calcium channel activity	IEA	AHRD
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903169	regulation of calcium ion transmembrane transport	None	Extended
BP	GO:1903170	negative regulation of calcium ion transmembrane transport	None	Extended
BP	GO:1903828	negative regulation of protein localization	None	Extended
BP	GO:1904062	regulation of cation transmembrane transport	None	Extended
BP	GO:1904063	negative regulation of cation transmembrane transport	None	Extended
BP	GO:1904950	negative regulation of establishment of protein localization	None	Extended
BP	GO:1905539	regulation of postsynapse to nucleus signaling pathway	IEA	AHRD
BP	GO:1905962	glutamatergic neuron differentiation	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2001257	regulation of cation channel activity	None	Extended
BP	GO:2001258	negative regulation of cation channel activity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000082	G1/S transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0000304	response to singlet oxygen	IEP	Predict GO terms from Neighborhoods
CC	GO:0000322	storage vacuole	IEP	Predict GO terms from Neighborhoods
CC	GO:0000323	lytic vacuole	IEP	Predict GO terms from Neighborhoods
CC	GO:0000324	fungal-type vacuole	IEP	Predict GO terms from Neighborhoods
BP	GO:0001818	negative regulation of cytokine production	IEP	Predict GO terms from Neighborhoods
MF	GO:0004683	calmodulin-dependent protein kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005640	nuclear outer membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005774	vacuolar membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006611	protein export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006865	amino acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007605	sensory perception of sound	IEP	Predict GO terms from Neighborhoods
BP	GO:0010444	guard mother cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010574	regulation of vascular endothelial growth factor production	IEP	Predict GO terms from Neighborhoods
CC	GO:0012505	endomembrane system	IEP	Predict GO terms from Neighborhoods
MF	GO:0015171	amino acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015175	neutral amino acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015804	neutral amino acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015849	organic acid transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0017056	structural constituent of nuclear pore	IEP	Predict GO terms from Neighborhoods
CC	GO:0019867	outer membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0022858	alanine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0031302	intrinsic component of endosome membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031303	integral component of endosome membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031968	organelle outer membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032328	alanine transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0042307	positive regulation of protein import into nucleus	IEP	Predict GO terms from Neighborhoods
CC	GO:0043195	terminal bouton	IEP	Predict GO terms from Neighborhoods
CC	GO:0044613	nuclear pore central transport channel	IEP	Predict GO terms from Neighborhoods
BP	GO:0044843	cell cycle G1/S phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0046824	positive regulation of nucleocytoplasmic transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050525	cutinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050954	sensory perception of mechanical stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051365	cellular response to potassium ion starvation	IEP	Predict GO terms from Neighborhoods
MF	GO:0061608	nuclear import signal receptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0071705	nitrogen compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0090204	protein localization to nuclear pore	IEP	Predict GO terms from Neighborhoods
BP	GO:0090435	protein localization to nuclear envelope	IEP	Predict GO terms from Neighborhoods
MF	GO:0140104	molecular carrier activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900182	positive regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:1901428	regulation of syringal lignin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901430	positive regulation of syringal lignin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904046	negative regulation of vascular endothelial growth factor production	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002048	EF_hand_dom	23	50
IPR002048	EF_hand_dom	68	85
IPR011992	EF-hand-dom_pair	21	85

External Links

No external refs found!

SOLTUB.AGRIA.G00000041764

Expression Profile

Co-expression Networks

Functional Annotation