SOLTUB.AGRIA.G00000041778


Description : RING/U-box superfamily protein


Gene families : OG_02_0017476 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000041778
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_57


Type GO Term Name Evidence Source
BP GO:0000209 protein polyubiquitination IEA AHRD
CC GO:0005634 nucleus IEA AHRD
CC GO:0005737 cytoplasm IEA AHRD
BP GO:0030154 cell differentiation IEA AHRD
CC GO:0031461 cullin-RING ubiquitin ligase complex IEA AHRD
MF GO:0031624 ubiquitin conjugating enzyme binding IEA AHRD
BP GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
BP GO:0048856 anatomical structure development IEA AHRD
MF GO:0061630 ubiquitin protein ligase activity IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000932 P-body IEP Predict GO terms from Neighborhoods
BP GO:0006401 RNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006402 mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP Predict GO terms from Neighborhoods
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Predict GO terms from Neighborhoods
MF GO:0032451 demethylase activity IEP Predict GO terms from Neighborhoods
BP GO:0034655 nucleobase-containing compound catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0035515 oxidative RNA demethylase activity IEP Predict GO terms from Neighborhoods
CC GO:0035770 ribonucleoprotein granule IEP Predict GO terms from Neighborhoods
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP Predict GO terms from Neighborhoods
BP GO:0044270 cellular nitrogen compound catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046700 heterocycle catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0051213 dioxygenase activity IEP Predict GO terms from Neighborhoods
BP GO:0070988 demethylation IEP Predict GO terms from Neighborhoods
MF GO:1990931 mRNA N6-methyladenosine dioxygenase activity IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002867 IBR_dom 208 271
IPR002867 IBR_dom 287 328
No external refs found!